Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LRO88_RS17950 Genome accession   NZ_CP089148
Coordinates   3257865..3258509 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252865..3263509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS17915 mrpB 3254055..3254486 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  LRO88_RS17920 mrpC 3254486..3254827 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  LRO88_RS17925 mrpD 3254820..3256301 (+) 1482 WP_046160793.1 Na+/H+ antiporter subunit D -
  LRO88_RS17930 mrpE 3256307..3256783 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  LRO88_RS17935 mrpF 3256783..3257067 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  LRO88_RS17940 mnhG 3257051..3257425 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  LRO88_RS17945 yuxO 3257466..3257846 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  LRO88_RS17950 comA 3257865..3258509 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  LRO88_RS17955 comP 3258590..3260902 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  LRO88_RS17960 comX 3260918..3261139 (-) 222 WP_014480704.1 competence pheromone ComX -
  LRO88_RS17965 - 3261141..3262004 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  LRO88_RS17970 degQ 3262189..3262329 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  LRO88_RS17975 - 3262551..3262676 (+) 126 WP_003228793.1 hypothetical protein -
  LRO88_RS17980 - 3262791..3263159 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=635326 LRO88_RS17950 WP_003220716.1 3257865..3258509(-) (comA) [Bacillus subtilis strain NIB353]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=635326 LRO88_RS17950 WP_003220716.1 3257865..3258509(-) (comA) [Bacillus subtilis strain NIB353]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1