Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LRO88_RS13795 Genome accession   NZ_CP089148
Coordinates   2523205..2524275 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain NIB353     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2518205..2529275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS13750 tapA 2518684..2519445 (-) 762 WP_064671037.1 amyloid fiber anchoring/assembly protein TapA -
  LRO88_RS13755 yqzG 2519716..2520042 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  LRO88_RS13760 spoIITA 2520084..2520263 (-) 180 WP_014480252.1 YqzE family protein -
  LRO88_RS13765 comGG 2520335..2520709 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  LRO88_RS13770 comGF 2520710..2521093 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  LRO88_RS13775 comGE 2521119..2521466 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  LRO88_RS13780 comGD 2521450..2521881 (-) 432 WP_032726159.1 competence type IV pilus minor pilin ComGD Machinery gene
  LRO88_RS13785 comGC 2521871..2522167 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  LRO88_RS13790 comGB 2522181..2523218 (-) 1038 WP_086344083.1 comG operon protein ComGB Machinery gene
  LRO88_RS13795 comGA 2523205..2524275 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  LRO88_RS13800 corA 2524679..2525632 (-) 954 WP_015483432.1 magnesium transporter CorA -
  LRO88_RS13805 yqhB 2525775..2527103 (+) 1329 WP_159376957.1 hemolysin family protein -
  LRO88_RS13810 rsbRD 2527156..2527992 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  LRO88_RS13820 mgsR 2528216..2528596 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  LRO88_RS13825 yqgY 2528828..2529073 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=635312 LRO88_RS13795 WP_004399124.1 2523205..2524275(-) (comGA) [Bacillus subtilis strain NIB353]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=635312 LRO88_RS13795 WP_004399124.1 2523205..2524275(-) (comGA) [Bacillus subtilis strain NIB353]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCTGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCCATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1