Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   N7980_RS06740 Genome accession   NZ_CP106671
Coordinates   1325061..1326833 (+) Length   590 a.a.
NCBI ID   WP_032726341.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1320061..1331833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS06720 (N7980_06720) etfB 1320796..1321569 (+) 774 WP_014477591.1 electron transfer flavoprotein subunit beta -
  N7980_RS06725 (N7980_06725) etfA 1321605..1322582 (+) 978 WP_041851065.1 electron transfer flavoprotein subunit alpha -
  N7980_RS06730 (N7980_06730) abfB 1322801..1324288 (+) 1488 WP_015483534.1 alpha-L-arabinofuranosidase AbfB -
  N7980_RS06735 (N7980_06735) trxA 1324611..1324925 (+) 315 WP_003222500.1 thioredoxin -
  N7980_RS06740 (N7980_06740) uvrC 1325061..1326833 (+) 1773 WP_032726341.1 excinuclease ABC subunit UvrC Machinery gene
  N7980_RS06745 (N7980_06745) - 1327203..1328429 (+) 1227 WP_024572581.1 aspartate kinase -
  N7980_RS06750 (N7980_06750) yslB 1328473..1328919 (-) 447 WP_003222508.1 YslB family protein -
  N7980_RS06755 (N7980_06755) sdhC 1329212..1329820 (+) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  N7980_RS06760 (N7980_06760) sdhA 1329854..1331614 (+) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68518.36 Da        Isoelectric Point: 9.4732

>NTDB_id=635309 N7980_RS06740 WP_032726341.1 1325061..1326833(+) (uvrC) [Bacillus subtilis strain SRCM116301]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGEPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPAAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=635309 N7980_RS06740 WP_032726341.1 1325061..1326833(+) (uvrC) [Bacillus subtilis strain SRCM116301]
ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACCCGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATGGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTATTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAGG
GAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TCTATTCAAAAAACAACCATTTCCTTCCGAAGGAGATTTTAGTTCCGGACAGCGTAGATCAATCCATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGCGACGAGGAGCGTTCAATCGGGGCTGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGATAACTCAAACATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGACGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACCGTTACAGGGCCGGATGATTACGGTTC
TATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCTGATCTGATTATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGCTTGGATATCCCGATCGCCGGTTTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGAGCCGCTGGAGGTGGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATCCAGGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCGCAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(197-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.014

99.661

0.588
  uvrC Streptococcus pneumoniae R6

58.673

99.661

0.585
  uvrC Streptococcus pneumoniae D39

58.673

99.661

0.585