Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LRO88_RS09195 Genome accession   NZ_CP089148
Coordinates   1736460..1737353 (+) Length   297 a.a.
NCBI ID   WP_231834269.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1731460..1742353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS09175 - 1732130..1733860 (+) 1731 WP_021479298.1 hypothetical protein -
  LRO88_RS09180 ylqH 1733857..1734138 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  LRO88_RS09185 sucC 1734311..1735468 (+) 1158 WP_159376798.1 ADP-forming succinate--CoA ligase subunit beta -
  LRO88_RS09190 sucD 1735497..1736399 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  LRO88_RS09195 dprA 1736460..1737353 (+) 894 WP_231834269.1 DNA-processing protein DprA Machinery gene
  LRO88_RS09200 topA 1737541..1739616 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  LRO88_RS09205 trmFO 1739692..1740999 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LRO88_RS09210 xerC 1741067..1741981 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32937.24 Da        Isoelectric Point: 9.9142

>NTDB_id=635296 LRO88_RS09195 WP_231834269.1 1736460..1737353(+) (dprA) [Bacillus subtilis strain NIB353]
MDQTAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILVSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEEIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=635296 LRO88_RS09195 WP_231834269.1 1736460..1737353(+) (dprA) [Bacillus subtilis strain NIB353]
TTGGATCAGACCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGACGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGGTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCACTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGAGATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Legionella pneumophila strain ERS1305867

37.793

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

41.353

89.562

0.37