Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LRO88_RS02435 Genome accession   NZ_CP089148
Coordinates   467368..468318 (+) Length   316 a.a.
NCBI ID   WP_159376646.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462368..473318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS02410 rapC 463827..464975 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  LRO88_RS02415 phrC 464959..465081 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  LRO88_RS02420 yczM 465181..465270 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  LRO88_RS02425 yczN 465352..465465 (-) 114 WP_032678937.1 YjcZ family sporulation protein -
  LRO88_RS02430 thrD 465619..466983 (-) 1365 WP_106074063.1 aspartate kinase -
  LRO88_RS02435 ceuB 467368..468318 (+) 951 WP_159376646.1 petrobactin ABC transporter permease YclN Machinery gene
  LRO88_RS02440 yclO 468311..469258 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  LRO88_RS02445 yclP 469252..470010 (+) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  LRO88_RS02450 yclQ 470032..470985 (+) 954 WP_159376647.1 petrobactin ABC transporter substrate-binding protein YclQ -
  LRO88_RS02455 cdaE 471031..472449 (-) 1419 WP_014478836.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34853.24 Da        Isoelectric Point: 9.9364

>NTDB_id=635274 LRO88_RS02435 WP_159376646.1 467368..468318(+) (ceuB) [Bacillus subtilis strain NIB353]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFLLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=635274 LRO88_RS02435 WP_159376646.1 467368..468318(+) (ceuB) [Bacillus subtilis strain NIB353]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTATTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTCTGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528