Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   N7980_RS00350 Genome accession   NZ_CP106671
Coordinates   56978..57772 (+) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain SRCM116301     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 51978..62772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS00330 (N7980_00330) walR 52220..52927 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  N7980_RS00335 (N7980_00335) walK 52935..54770 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  N7980_RS00340 (N7980_00340) walH 54760..56127 (+) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  N7980_RS00345 (N7980_00345) walI 56114..56956 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  N7980_RS00350 (N7980_00350) vicX 56978..57772 (+) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  N7980_RS00355 (N7980_00355) htrA 57854..59056 (+) 1203 WP_041850281.1 serine protease HtrC Regulator
  N7980_RS00360 (N7980_00360) - 59076..59205 (+) 130 Protein_66 hypothetical protein -
  N7980_RS00365 (N7980_00365) - 59233..59385 (+) 153 Protein_67 ATP-binding protein -
  N7980_RS00370 (N7980_00370) rocR 59367..60752 (-) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  N7980_RS00375 (N7980_00375) rocD 60993..62198 (+) 1206 WP_041850283.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=635274 N7980_RS00350 WP_003226939.1 56978..57772(+) (vicX) [Bacillus subtilis strain SRCM116301]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=635274 N7980_RS00350 WP_003226939.1 56978..57772(+) (vicX) [Bacillus subtilis strain SRCM116301]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53