Detailed information NTG0635272

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LRO88_RS02410
• Genome accession: NZ_CP089148
• Coordinates: 463827..464975 (+)
• Length: 382 a.a.
• NCBI ID: WP_014475800.1
• Uniprot ID: A0A0D1KXJ1
• Organism: Bacillus subtilis strain NIB353
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 458827..469975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS02390	yclH	459198..459878 (-)	681	WP_015382762.1	ABC transporter ATP-binding protein	-
LRO88_RS02395	yclI	459894..461360 (-)	1467	WP_046160054.1	ABC transporter permease	-
LRO88_RS02400	yclJ	461573..462256 (+)	684	WP_128422071.1	two-component system response regulator YclJ	-
LRO88_RS02405	yclK	462243..463664 (+)	1422	WP_153952928.1	two-component system sensor histidine kinase YclK	-
LRO88_RS02410	rapC	463827..464975 (+)	1149	WP_014475800.1	response regulator aspartate phosphatase RapC	Regulator
LRO88_RS02415	phrC	464959..465081 (+)	123	WP_003224994.1	phosphatase RapC inhibitor PhrC	Regulator
LRO88_RS02420	yczM	465181..465270 (-)	90	WP_015482794.1	YjcZ family sporulation protein	-
LRO88_RS02425	yczN	465352..465465 (-)	114	WP_032678937.1	YjcZ family sporulation protein	-
LRO88_RS02430	thrD	465619..466983 (-)	1365	WP_106074063.1	aspartate kinase	-
LRO88_RS02435	ceuB	467368..468318 (+)	951	WP_159376646.1	petrobactin ABC transporter permease YclN	Machinery gene
LRO88_RS02440	yclO	468311..469258 (+)	948	WP_003246705.1	petrobactin ABC transporter permease YclO	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45649.65 Da
• Isoelectric Point: 4.9618

>NTDB_id=635272 LRO88_RS02410 WP_014475800.1 463827..464975(+) (rapC) [Bacillus subtilis strain NIB353]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=635272 LRO88_RS02410 WP_014475800.1 463827..464975(+) (rapC) [Bacillus subtilis strain NIB353]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTACAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-66)

3D structure

• AlphaFold DB: A0A0D1KXJ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	99.738	100	0.997
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568