Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   B591_RS14395 Genome accession   NZ_CP106650
Coordinates   3280300..3280899 (-) Length   199 a.a.
NCBI ID   WP_008413902.1    Uniprot ID   A0ABR4S3X7
Organism   Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3275300..3285899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B591_RS14370 (B591_14293) - 3275947..3277038 (-) 1092 WP_023422208.1 aspartate-semialdehyde dehydrogenase -
  B591_RS14375 (B591_14298) - 3277035..3278306 (-) 1272 WP_008413895.1 aspartate kinase -
  B591_RS14380 (B591_14303) - 3278572..3278799 (-) 228 WP_023422209.1 hypothetical protein -
  B591_RS14385 (B591_14308) - 3279012..3279620 (+) 609 WP_023422210.1 elongation factor Tu -
  B591_RS14390 (B591_14313) - 3279648..3280307 (-) 660 WP_023418132.1 DUF5063 domain-containing protein -
  B591_RS14395 (B591_14318) recR 3280300..3280899 (-) 600 WP_008413902.1 recombination mediator RecR Machinery gene
  B591_RS14400 (B591_14323) - 3281113..3281454 (-) 342 WP_023418133.1 YbaB/EbfC family nucleoid-associated protein -
  B591_RS14405 (B591_14328) - 3281860..3282606 (+) 747 WP_023418134.1 SLATT domain-containing protein -
  B591_RS14410 (B591_14333) - 3282631..3283281 (-) 651 WP_023422211.1 hypothetical protein -
  B591_RS14415 (B591_14338) - 3283421..3284113 (-) 693 WP_023418136.1 GntR family transcriptional regulator -
  B591_RS14420 (B591_14343) - 3284336..3285730 (-) 1395 WP_023422212.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21801.11 Da        Isoelectric Point: 5.1616

>NTDB_id=635239 B591_RS14395 WP_008413902.1 3280300..3280899(-) (recR) [Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHSLLEVKDKVRFCSVCGNVAQQEQCGICRDQRRDAAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=635239 B591_RS14395 WP_008413902.1 3280300..3280899(-) (recR) [Streptomyces sp. GBA 94-10 4N24 strain GBA 94-10]
GTGTACGAAGGCGTGGTCCAGGAGCTGATCGACGAGCTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTCCAGGCGGAGCCGGCCGATGTGCGGCGCCTCGCGCACTCGCTGCTGGAAGTGAAGGACAAGGTCC
GCTTCTGCTCGGTCTGCGGGAACGTCGCGCAGCAGGAGCAGTGCGGCATCTGTCGCGACCAGCGCCGCGACGCCGCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGGGAGTTCCGTGGCCGCTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGTATCCGTGAACTCCTCGCCCGCCTCGCCGACGGCA
CCGTCACCGAGCTGATCCTCGCCACCGATCCCAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGGATGATCAAG
CCCATGGGTCTGAAGGTCACCCGCCTCGCCAGCGGGCTGCCGGTGGGCGGAGACCTGGAATACGCGGACGAGGTCACTCT
GGGCCGCGCCTTCGAAGGGAGACGACTCCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462