Detailed information NTG0635169

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: N8E87_RS01530
• Genome accession: NZ_CP104917
• Coordinates: 309051..310301 (+)
• Length: 416 a.a.
• NCBI ID: WP_110479873.1
• Uniprot ID: A0AAE5WFY0
• Organism: Avibacterium paragallinarum strain AP-2
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 304051..315301

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8E87_RS01515 (N8E87_01515)	-	304505..306532 (-)	2028	WP_264245492.1	BCCT family transporter	-
N8E87_RS01520 (N8E87_01520)	tig	307040..308338 (+)	1299	WP_264245494.1	trigger factor	-
N8E87_RS01525 (N8E87_01525)	clpP	308457..309047 (+)	591	WP_017806897.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
N8E87_RS01530 (N8E87_01530)	clpX	309051..310301 (+)	1251	WP_110479873.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
N8E87_RS01535 (N8E87_01535)	aspA	310524..311951 (+)	1428	WP_110479872.1	aspartate ammonia-lyase	-
N8E87_RS01540 (N8E87_01540)	-	312042..313838 (-)	1797	WP_264245497.1	long-chain fatty acid--CoA ligase	-
N8E87_RS01545 (N8E87_01545)	rimI	313999..314442 (-)	444	WP_264245499.1	ribosomal protein S18-alanine N-acetyltransferase	-
N8E87_RS01550 (N8E87_01550)	-	314444..314854 (-)	411	WP_026138449.1	DNA polymerase III subunit psi	-

Sequence

Protein

• Length: 416 a.a.
• Molecular weight: 45731.42 Da
• Isoelectric Point: 4.8036

>NTDB_id=635169 N8E87_RS01530 WP_110479873.1 309051..310301(+) (clpX) [Avibacterium paragallinarum strain AP-2]
MTTEQQLHCSICGKERSEVKKLIAGEDGAICNECIELCHNLLVEAEQQANENPQENASQPEKAELPTPHQIRAHLDDYVI
GQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHAALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKNQAPQIIYKS

Nucleotide

• Length: 1251 bp

>NTDB_id=635169 N8E87_RS01530 WP_110479873.1 309051..310301(+) (clpX) [Avibacterium paragallinarum strain AP-2]
ATGACAACAGAACAACAACTCCATTGTTCCATCTGCGGCAAAGAACGCAGCGAAGTCAAAAAATTGATCGCGGGTGAAGA
TGGGGCGATTTGTAATGAATGTATCGAACTTTGCCACAATTTATTGGTTGAGGCAGAGCAACAAGCAAACGAAAACCCGC
AAGAAAACGCCTCACAACCTGAAAAGGCAGAATTACCTACGCCTCATCAAATTCGCGCGCATTTAGATGATTATGTCATT
GGACAAGACTATGCCAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
CGATGTGGAACTAGGTAAAAGTAATATTTTGCTCATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CTAGAATGCTGAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTGCTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGCGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACCATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGGAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATTGGGCGTTTACCCGTGATAGCGCCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGCTGCCCTCGTGGCAATGGCAAAACAGGCTTTGGAAAGAAAAACGGGGGCTAGGGGATTGC
GTTCCATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAACCAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

3D structure

• AlphaFold DB: A0AAE5WFY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.664	98.798	0.57
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.878	98.558	0.541