Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   N8E87_RS01240 Genome accession   NZ_CP104917
Coordinates   253988..254707 (-) Length   239 a.a.
NCBI ID   WP_264245430.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 248988..259707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS01225 (N8E87_01225) recC 249619..253023 (-) 3405 WP_264245424.1 exodeoxyribonuclease V subunit gamma -
  N8E87_RS01230 (N8E87_01230) comQ 253035..253340 (-) 306 WP_264245426.1 DUF5374 domain-containing protein Machinery gene
  N8E87_RS01235 (N8E87_01235) comP 253321..253986 (-) 666 WP_264245428.1 DUF2572 family protein Machinery gene
  N8E87_RS01240 (N8E87_01240) comO 253988..254707 (-) 720 WP_264245430.1 hypothetical protein Machinery gene
  N8E87_RS01245 (N8E87_01245) comN 254709..255230 (-) 522 WP_264245432.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N8E87_RS01265 (N8E87_01265) pal 255870..256322 (-) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  N8E87_RS01270 (N8E87_01270) tolB 256333..257622 (-) 1290 WP_264246717.1 Tol-Pal system beta propeller repeat protein TolB -
  N8E87_RS01275 (N8E87_01275) tolA 257674..258882 (-) 1209 WP_264245434.1 cell envelope integrity protein TolA -
  N8E87_RS01280 (N8E87_01280) tolR 258899..259321 (-) 423 WP_046098639.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27804.11 Da        Isoelectric Point: 8.4448

>NTDB_id=635166 N8E87_RS01240 WP_264245430.1 253988..254707(-) (comO) [Avibacterium paragallinarum strain AP-2]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQASGEAMGSCVLFFYDLDSSGCIGSTYTKGLCIQNGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWIKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=635166 N8E87_RS01240 WP_264245430.1 253988..254707(-) (comO) [Avibacterium paragallinarum strain AP-2]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTGTCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGCTTCAGGGGAGGCGATGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAAATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGATAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.059

99.582

0.469