Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   N8E87_RS01230 Genome accession   NZ_CP104917
Coordinates   253035..253340 (-) Length   101 a.a.
NCBI ID   WP_264245426.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 248035..258340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS01215 (N8E87_01215) araD 248040..248735 (+) 696 WP_110503409.1 L-ribulose-5-phosphate 4-epimerase -
  N8E87_RS01220 (N8E87_01220) - 248763..249581 (+) 819 WP_264245423.1 pyridoxal phosphatase -
  N8E87_RS01225 (N8E87_01225) recC 249619..253023 (-) 3405 WP_264245424.1 exodeoxyribonuclease V subunit gamma -
  N8E87_RS01230 (N8E87_01230) comQ 253035..253340 (-) 306 WP_264245426.1 DUF5374 domain-containing protein Machinery gene
  N8E87_RS01235 (N8E87_01235) comP 253321..253986 (-) 666 WP_264245428.1 DUF2572 family protein Machinery gene
  N8E87_RS01240 (N8E87_01240) comO 253988..254707 (-) 720 WP_264245430.1 hypothetical protein Machinery gene
  N8E87_RS01245 (N8E87_01245) comN 254709..255230 (-) 522 WP_264245432.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N8E87_RS01265 (N8E87_01265) pal 255870..256322 (-) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  N8E87_RS01270 (N8E87_01270) tolB 256333..257622 (-) 1290 WP_264246717.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11802.73 Da        Isoelectric Point: 10.1103

>NTDB_id=635164 N8E87_RS01230 WP_264245426.1 253035..253340(-) (comQ) [Avibacterium paragallinarum strain AP-2]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSVVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=635164 N8E87_RS01230 WP_264245426.1 253035..253340(-) (comQ) [Avibacterium paragallinarum strain AP-2]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGTGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396