Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N8E87_RS00460 Genome accession   NZ_CP104917
Coordinates   92803..93570 (+) Length   255 a.a.
NCBI ID   WP_264245250.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87803..98570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS00445 (N8E87_00445) - 89044..89565 (+) 522 WP_264245245.1 alpha-2,3-sialyltransferase -
  N8E87_RS00450 (N8E87_00450) - 89534..89998 (+) 465 WP_264245247.1 alpha-2,3-sialyltransferase -
  N8E87_RS00455 (N8E87_00455) - 90095..92644 (-) 2550 WP_264245249.1 penicillin-binding protein 1A -
  N8E87_RS00460 (N8E87_00460) comA 92803..93570 (+) 768 WP_264245250.1 hypothetical protein Machinery gene
  N8E87_RS00465 (N8E87_00465) - 93600..94625 (+) 1026 WP_264245252.1 PilN domain-containing protein -
  N8E87_RS00470 (N8E87_00470) - 94625..94984 (+) 360 WP_017806828.1 hypothetical protein -
  N8E87_RS00475 (N8E87_00475) comE 94993..96315 (+) 1323 WP_264245254.1 type IV pilus secretin PilQ Machinery gene
  N8E87_RS00480 (N8E87_00480) aroK 96549..97076 (+) 528 WP_264245256.1 shikimate kinase AroK -
  N8E87_RS00485 (N8E87_00485) aroB 97093..98181 (+) 1089 WP_264245258.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30476.30 Da        Isoelectric Point: 7.5005

>NTDB_id=635157 N8E87_RS00460 WP_264245250.1 92803..93570(+) (comA) [Avibacterium paragallinarum strain AP-2]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENRPRFCVIENDISFERLKPNLLVGECNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
DTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=635157 N8E87_RS00460 WP_264245250.1 92803..93570(+) (comA) [Avibacterium paragallinarum strain AP-2]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATCGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGAATGTAATTATTCATTAAAAACTTTGAAATTTGTGGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGTGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCG
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCACTGTTTTTTTATCAAGATGAAGTCTATGTATTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGTT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
GATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

38.306

97.255

0.373
  comA Haemophilus influenzae Rd KW20

38.306

97.255

0.373