Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N8E86_RS09815 Genome accession   NZ_CP104914
Coordinates   2103166..2103933 (-) Length   255 a.a.
NCBI ID   WP_035688099.1    Uniprot ID   A0A0F5EV19
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098166..2108933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS09785 (N8E86_09785) aroB 2098554..2099642 (-) 1089 WP_264255775.1 3-dehydroquinate synthase -
  N8E86_RS09790 (N8E86_09790) aroK 2099659..2100186 (-) 528 WP_264255776.1 shikimate kinase AroK -
  N8E86_RS09795 (N8E86_09795) comE 2100420..2101742 (-) 1323 WP_264255778.1 type IV pilus secretin PilQ Machinery gene
  N8E86_RS09800 (N8E86_09800) - 2101751..2102110 (-) 360 WP_017806828.1 hypothetical protein -
  N8E86_RS09805 (N8E86_09805) - 2102110..2102658 (-) 549 WP_264255779.1 hypothetical protein -
  N8E86_RS09810 (N8E86_09810) - 2102624..2103136 (-) 513 WP_264255780.1 PilN domain-containing protein -
  N8E86_RS09815 (N8E86_09815) comA 2103166..2103933 (-) 768 WP_035688099.1 hypothetical protein Machinery gene
  N8E86_RS09820 (N8E86_09820) - 2104092..2106641 (+) 2550 WP_264255781.1 penicillin-binding protein 1A -
  N8E86_RS09825 (N8E86_09825) - 2106738..2107694 (-) 957 WP_264255782.1 alpha-2,3-sialyltransferase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30475.31 Da        Isoelectric Point: 7.8120

>NTDB_id=635145 N8E86_RS09815 WP_035688099.1 2103166..2103933(-) (comA) [Avibacterium paragallinarum strain AG21-0333]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENRPRFCVIENDISFERLKPNLLVGECNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
NTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=635145 N8E86_RS09815 WP_035688099.1 2103166..2103933(-) (comA) [Avibacterium paragallinarum strain AG21-0333]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATCGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGAATGTAATTATTCATTAAAAACTTTGAAATTTGTGGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGCGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCG
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCACTGTTTTTTTATCAAGATGAAGTCTATGTGTTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGTT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
AATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EV19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

38.306

97.255

0.373
  comA Haemophilus influenzae Rd KW20

38.306

97.255

0.373