Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N8E86_RS07320 Genome accession   NZ_CP104914
Coordinates   1551768..1552373 (+) Length   201 a.a.
NCBI ID   WP_264255392.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1546768..1557373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS07295 (N8E86_07295) - 1548214..1548465 (+) 252 WP_264255389.1 YadA C-terminal domain-containing protein -
  N8E86_RS07305 (N8E86_07305) secG 1548845..1549183 (-) 339 WP_035685027.1 preprotein translocase subunit SecG -
  N8E86_RS07310 (N8E86_07310) - 1549296..1551236 (-) 1941 WP_264255390.1 DNA topoisomerase III -
  N8E86_RS07315 (N8E86_07315) - 1551351..1551680 (+) 330 WP_035685032.1 YbaB/EbfC family nucleoid-associated protein -
  N8E86_RS07320 (N8E86_07320) recR 1551768..1552373 (+) 606 WP_264255392.1 recombination mediator RecR Machinery gene
  N8E86_RS07325 (N8E86_07325) metC 1552458..1553651 (-) 1194 WP_264255394.1 cystathionine beta-lyase -
  N8E86_RS07330 (N8E86_07330) - 1553810..1554412 (+) 603 WP_017806229.1 peroxiredoxin C -
  N8E86_RS07335 (N8E86_07335) - 1554577..1554861 (+) 285 WP_264255395.1 YcgL domain-containing protein -
  N8E86_RS07340 (N8E86_07340) hldE 1555285..1556712 (-) 1428 WP_264255396.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22119.23 Da        Isoelectric Point: 5.0764

>NTDB_id=635137 N8E86_RS07320 WP_264255392.1 1551768..1552373(+) (recR) [Avibacterium paragallinarum strain AG21-0333]
MQTSPLLETLIDALRCLPGVGPKSAQRMAYHLLQRDRSGGMDLARALTAAMSQIGHCEQCRTFTEEEVCSICENPRRQNS
GLLCVVEQPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLNRRLENESFTEVILATNPTIEGEATANYIAEL
CMQRGIKVTRIAHGIPVGGELEMVDSNTLGHSFSGRREIQY

Nucleotide


Download         Length: 606 bp        

>NTDB_id=635137 N8E86_RS07320 WP_264255392.1 1551768..1552373(+) (recR) [Avibacterium paragallinarum strain AG21-0333]
ATGCAAACCAGTCCATTATTAGAAACGCTGATTGACGCATTACGCTGTTTACCTGGTGTGGGGCCGAAATCCGCCCAGCG
AATGGCTTATCATTTATTGCAACGCGATCGTAGCGGTGGAATGGATCTCGCCCGTGCCTTAACCGCCGCGATGTCGCAAA
TTGGGCATTGCGAACAATGTCGCACCTTCACCGAAGAAGAGGTCTGCAGCATTTGCGAAAATCCACGCCGCCAAAATTCG
GGCTTACTCTGTGTGGTGGAACAACCCTCCGATATTCAAGCCATTGAACAAACAGGGCAATTTTCAGGGCGTTATTTTGT
GCTGATGGGGCATTTATCCCCTCTAGATGGAATTGGTCCAAAAGAGATTGGGCTGGATTTACTCAATCGCCGCTTAGAAA
ATGAATCGTTTACCGAAGTTATTTTAGCCACCAACCCAACCATTGAGGGCGAAGCCACTGCCAATTATATTGCCGAGCTT
TGTATGCAACGAGGAATCAAAGTAACGCGTATCGCCCACGGCATTCCCGTTGGTGGCGAACTGGAAATGGTTGATAGCAA
TACCCTAGGGCATTCTTTTTCGGGACGGAGAGAGATTCAATATTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

46.734

99.005

0.463
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.005

0.428
  recR Streptococcus pneumoniae R6

38.421

94.527

0.363