Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   N8E86_RS05570 Genome accession   NZ_CP104914
Coordinates   1154757..1156589 (+) Length   610 a.a.
NCBI ID   WP_264256966.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149757..1161589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS05545 (N8E86_05545) - 1150791..1150973 (+) 183 WP_035685738.1 Trm112 family protein -
  N8E86_RS05550 (N8E86_05550) kdsB 1150970..1151752 (+) 783 WP_264256963.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N8E86_RS05555 (N8E86_05555) - 1152012..1152956 (-) 945 WP_264256964.1 ABC transporter substrate-binding protein -
  N8E86_RS05560 (N8E86_05560) - 1152965..1153720 (-) 756 WP_264256965.1 ABC transporter permease -
  N8E86_RS05565 (N8E86_05565) - 1153720..1154433 (-) 714 WP_264257021.1 ABC transporter ATP-binding protein -
  N8E86_RS05570 (N8E86_05570) uvrC 1154757..1156589 (+) 1833 WP_264256966.1 excinuclease ABC subunit UvrC Machinery gene
  N8E86_RS05575 (N8E86_05575) - 1156638..1157246 (-) 609 WP_264256967.1 DedA family protein -
  N8E86_RS05580 (N8E86_05580) rplY 1157487..1157774 (+) 288 WP_017805712.1 50S ribosomal protein L25 -
  N8E86_RS05585 (N8E86_05585) - 1158111..1158671 (+) 561 WP_264256968.1 fimbrial protein -
  N8E86_RS05590 (N8E86_05590) - 1158748..1159443 (+) 696 WP_110479462.1 molecular chaperone -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69049.05 Da        Isoelectric Point: 9.6411

>NTDB_id=635129 N8E86_RS05570 WP_264256966.1 1154757..1156589(+) (uvrC) [Avibacterium paragallinarum strain AG21-0333]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLSSYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQGLNFEEAAHIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRSVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGVEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQAFQQ
LKVKWDKKRPHLIGVAKGVDRRAGLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=635129 N8E86_RS05570 WP_264256966.1 1154757..1156589(+) (uvrC) [Avibacterium paragallinarum strain AG21-0333]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTACCGCAATCGCCTGGTGTTTATCGAATGTATGACGCAAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTGTCGAGCTATTTTCGTCGCAATGTGTCGAGTAAAAAAA
CGGAAGCTTTAGTAGCAGCCATTCATCGCATTGAAACCACCATCACTTCAAGCGAAACAGAAGCCTTGCTACTCGAGCAT
AACTACATCAAAACCTACCAGCCGCGTTATAACGTATTGTTGCGTGATGATAAATCTTACCCCTACATTCTTCTCACCAA
AGAACGCCACCCCAGAATTACCGCTTACCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACTCTATCATTATTACAAAAATTATTCCCCGTGCGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCGGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCTCGTCTTTTTTTGCAAGGCAAGGATCAACAAGTACTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGGGTTAAATTTTGAAGAGGCGGCACACATTCGTGATCAAATTCAAGCGGTGCGAGCGGTGATCGAAAAA
CAATTCGTCAGCAATGATCGCCTTGATGACATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTACAAGT
GCTGTTTATTAGACAAGGCAAGATTTTGGGCAACCGTAGCTATTTTCCAAAAGTGCCAGCCAATACGGATTTATCTGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAAGCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGGCGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGCAAATATTTGCAACTGGCACAAATGAACGCTCAAGCGGCGTTGGTTACTCAACTGAAACAATCCACGC
TGATTAATGAACGTTATCAAGCGTTGCAAGATTTGCTTGGCGTTGAAAAAATCCAACGAATGGAATGTTTTGACATCAGC
CACACAATGGGCGAACAAACTATCGCTTCTTGTGTGGTGTTTAATCAAGATGGGCCGCTAAAATCCGACTATCGTCGTTT
TAATATTACGGGCATCACGGGGGGCGATGATTATGCCGCAATGGAGCAAGCTTTATTGAAACGCTATGATAAAGATCTGG
ATGCAGAAAAAATTCCTGATGTGATCTTTATTGATGGCGGTAAAGGACAGCTTAACCGAGCCTTACAAGCGTTCCAACAG
CTCAAGGTAAAATGGGACAAAAAAAGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCAGGCCTAGAAAC
ACTCATCATCAGCAAGCAAGATCGCGAAATTAATTTACCGCCGGATAGCCTTGCCTTGCATTTAATTCAGCATATCCGTG
ACGAAAGCCATAACCACGCCATTAGCGGACACCGCAAAAAACGGCAAAAAGCCTTCACCCAAAGCGGATTAGAAACCATT
GAAGGGGTGGGGGCTAAACGTCGTCAAGCCCTATTGAAATACCTTGGTGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCTGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGGGATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)

UvrB/uvrC motif (UVR)

(203-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.604

98.525

0.37
  uvrC Streptococcus pneumoniae R6

37.271

98.525

0.367
  uvrC Streptococcus pneumoniae D39

37.271

98.525

0.367