Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP21_RS01430 Genome accession   NZ_CP089068
Coordinates   312005..312562 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307005..317562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP21_RS01410 (LSP21_01410) pilR 308281..309618 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  LSP21_RS01415 (LSP21_01415) thiO 309664..310758 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  LSP21_RS01420 (LSP21_01420) - 310893..311402 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  LSP21_RS01425 (LSP21_01425) - 311508..312014 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LSP21_RS01430 (LSP21_01430) pilV 312005..312562 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LSP21_RS01435 (LSP21_01435) pilW 312559..313383 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LSP21_RS01440 (LSP21_01440) pilX 313380..313967 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LSP21_RS01445 (LSP21_01445) pilY1 313979..317470 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=635115 LSP21_RS01430 WP_003119423.1 312005..312562(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF13]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=635115 LSP21_RS01430 WP_003119423.1 312005..312562(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF13]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995