Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U719_RS16120 Genome accession   NC_022794
Coordinates   3117255..3117773 (-) Length   172 a.a.
NCBI ID   WP_023469850.1    Uniprot ID   -
Organism   Exiguobacterium sp. MH3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3112255..3122773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U719_RS16100 (U719_16455) dnaB 3113048..3114400 (-) 1353 WP_023469846.1 replicative DNA helicase -
  U719_RS16105 (U719_16460) rplI 3114420..3114863 (-) 444 WP_023469847.1 50S ribosomal protein L9 -
  U719_RS16110 (U719_16465) - 3114860..3116845 (-) 1986 WP_023469848.1 DHH family phosphoesterase -
  U719_RS16115 (U719_16470) rpsR 3116980..3117210 (-) 231 WP_023469849.1 30S ribosomal protein S18 -
  U719_RS16120 (U719_16475) ssb 3117255..3117773 (-) 519 WP_023469850.1 single-stranded DNA-binding protein Machinery gene
  U719_RS16125 (U719_16480) rpsF 3117797..3118084 (-) 288 WP_023469851.1 30S ribosomal protein S6 -
  U719_RS16130 (U719_16485) ychF 3118205..3119305 (-) 1101 WP_023469852.1 redox-regulated ATPase YchF -
  U719_RS16135 (U719_16490) - 3119534..3119722 (-) 189 WP_023469853.1 DUF951 domain-containing protein -
  U719_RS16140 (U719_16495) - 3119694..3120623 (-) 930 WP_023469854.1 mechanosensitive ion channel family protein -
  U719_RS16145 (U719_16500) yyaC 3120806..3121423 (+) 618 WP_034786343.1 spore protease YyaC -
  U719_RS16150 (U719_16505) - 3121461..3122225 (-) 765 WP_023469856.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18544.19 Da        Isoelectric Point: 4.9901

>NTDB_id=63510 U719_RS16120 WP_023469850.1 3117255..3117773(-) (ssb) [Exiguobacterium sp. MH3]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKEGQRRYRAEVVADSVRFLESRNASRSSDGSEGYASSTGGNGNAAGWGSQQQQNNSSSPAPASSNSGFGADPFSGG
SSIDLSDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=63510 U719_RS16120 WP_023469850.1 3117255..3117773(-) (ssb) [Exiguobacterium sp. MH3]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCGGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCATGTGACCGTCCTTTCACAGGGCAAGATGGGAAGCGAGAAGCTGATTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAGAAGGGTAGTCTTGCTGGTGTAGAGGGTCGCCTCCAGATTAGC
AGCTACGACGATAAAGAAGGGCAACGCCGTTATCGTGCGGAAGTCGTCGCTGATAGCGTCCGCTTCCTTGAGTCACGTAA
CGCGAGCCGTTCTTCGGATGGTAGCGAAGGCTACGCTTCATCTACTGGTGGAAACGGGAATGCTGCAGGATGGGGTTCAC
AGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTCAGCGGCGGT
AGTTCGATCGACCTTTCAGACGACGATCTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.547
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.222

100

0.547

Multiple sequence alignment