Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP18_RS23585 Genome accession   NZ_CP089063
Coordinates   5042863..5043420 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5037863..5048420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP18_RS23565 (LSP18_23785) pilR 5039139..5040476 (+) 1338 WP_043556106.1 two-component system response regulator PilR Regulator
  LSP18_RS23570 (LSP18_23790) thiO 5040522..5041616 (-) 1095 WP_031671383.1 glycine oxidase ThiO -
  LSP18_RS23575 (LSP18_23795) - 5041751..5042260 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  LSP18_RS23580 (LSP18_23800) - 5042366..5042872 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LSP18_RS23585 (LSP18_23805) pilV 5042863..5043420 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LSP18_RS23590 (LSP18_23810) pilW 5043417..5044241 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LSP18_RS23595 (LSP18_23815) pilX 5044238..5044825 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LSP18_RS23600 (LSP18_23820) pilY1 5044837..5048328 (+) 3492 WP_049308604.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=634994 LSP18_RS23585 WP_003119423.1 5042863..5043420(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF37]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=634994 LSP18_RS23585 WP_003119423.1 5042863..5043420(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF37]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995