Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   CSB63_RS07735 Genome accession   NZ_CP089060
Coordinates   1460864..1461898 (-) Length   344 a.a.
NCBI ID   WP_372450197.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1455864..1466898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS07710 (CSB63_1620) ilvD 1456131..1457849 (-) 1719 WP_023909890.1 dihydroxy-acid dehydratase -
  CSB63_RS07715 (CSB63_1621) - 1457962..1459143 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  CSB63_RS07725 (CSB63_1622) trmB 1459364..1460005 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CSB63_RS07730 (CSB63_1623) ccrZ 1460015..1460806 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  CSB63_RS07735 (CSB63_1624) pptB 1460864..1461898 (-) 1035 WP_372450197.1 ABC transporter permease Regulator
  CSB63_RS07740 (CSB63_1625) pptA 1461898..1462629 (-) 732 WP_084829044.1 ABC transporter ATP-binding protein Regulator
  CSB63_RS07745 (CSB63_1626) - 1462694..1463113 (+) 420 WP_084829045.1 HIT family protein -
  CSB63_RS07750 (CSB63_1627) - 1463110..1463409 (+) 300 WP_084829809.1 hypothetical protein -
  CSB63_RS07755 (CSB63_1628) - 1463460..1464188 (-) 729 WP_134973435.1 hypothetical protein -
  CSB63_RS07760 (CSB63_1629) - 1464204..1464797 (-) 594 WP_134973437.1 DUF4230 domain-containing protein -
  CSB63_RS07765 (CSB63_1630) - 1464856..1464981 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40089.57 Da        Isoelectric Point: 10.6158

>NTDB_id=634883 CSB63_RS07735 WP_372450197.1 1460864..1461898(-) (pptB) [Streptococcus thermophilus strain CH8]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCFLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTVLKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=634883 CSB63_RS07735 WP_372450197.1 1460864..1461898(-) (pptB) [Streptococcus thermophilus strain CH8]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACCACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTTTTTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGTGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.547

100

0.985

  pptB Streptococcus salivarius strain HSISS4

93.023

100

0.93