Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CSB63_RS02240 Genome accession   NZ_CP089060
Coordinates   400491..400934 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 395491..405934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS02220 (CSB63_0415) - 396012..396764 (-) 753 WP_011226910.1 NUDIX domain-containing protein -
  CSB63_RS02225 (CSB63_0416) - 396828..397934 (-) 1107 WP_011225557.1 AAA family ATPase -
  CSB63_RS02230 (CSB63_0417) gdhA 398278..399630 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  CSB63_RS02235 (CSB63_0418) - 399889..400299 (+) 411 WP_011225559.1 peptide deformylase -
  CSB63_RS02240 (CSB63_0419) rcrR 400491..400934 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CSB63_RS02245 (CSB63_0420) rcrP 400938..402752 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  CSB63_RS02250 (CSB63_0421) rcrQ 402742..404520 (+) 1779 WP_134973097.1 ABC transporter ATP-binding protein Regulator
  CSB63_RS02255 - 404676..405047 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=634857 CSB63_RS02240 WP_002945408.1 400491..400934(+) (rcrR) [Streptococcus thermophilus strain CH8]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=634857 CSB63_RS02240 WP_002945408.1 400491..400934(+) (rcrR) [Streptococcus thermophilus strain CH8]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537