Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LSO60_RS13555 Genome accession   NZ_CP089051
Coordinates   2845310..2849935 (-) Length   1541 a.a.
NCBI ID   WP_151732154.1    Uniprot ID   A0AA46NFW3
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2840310..2854935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS13530 (LSO60_13505) - 2840536..2841555 (+) 1020 WP_010588607.1 class I SAM-dependent methyltransferase -
  LSO60_RS13535 (LSO60_13510) - 2841569..2843029 (+) 1461 WP_004994944.1 amino acid permease -
  LSO60_RS13540 (LSO60_13515) - 2843334..2844539 (+) 1206 WP_004992482.1 RtcB family protein -
  LSO60_RS13545 (LSO60_13520) - 2844559..2844723 (+) 165 WP_004992481.1 hypothetical protein -
  LSO60_RS13550 (LSO60_13525) - 2844858..2845310 (-) 453 WP_004992479.1 hypothetical protein -
  LSO60_RS13555 (LSO60_13530) chpA 2845310..2849935 (-) 4626 WP_151732154.1 Hpt domain-containing protein Regulator
  LSO60_RS13560 (LSO60_13535) - 2850084..2852165 (-) 2082 WP_004992476.1 methyl-accepting chemotaxis protein -
  LSO60_RS13565 (LSO60_13540) - 2852213..2852749 (-) 537 WP_004992475.1 chemotaxis protein CheW -
  LSO60_RS13570 (LSO60_13545) - 2852755..2853123 (-) 369 WP_004992474.1 response regulator -
  LSO60_RS13575 (LSO60_13550) pilG 2853151..2853534 (-) 384 WP_004992473.1 twitching motility response regulator PilG Regulator
  LSO60_RS13580 (LSO60_13555) - 2853840..2854487 (+) 648 WP_004992472.1 hypothetical protein -

Sequence


Protein


Download         Length: 1541 a.a.        Molecular weight: 172911.19 Da        Isoelectric Point: 4.3912

>NTDB_id=634823 LSO60_RS13555 WP_151732154.1 2845310..2849935(-) (chpA) [Acinetobacter ursingii strain RIVM_C010559]
MKEILKHLVEKISLPEDSFLDQDEEILEIFIEELEEIFQELGQLIPQWVADSDEQQVLADVRRHFHTLKGSGRMVGAKSS
SELAWTVEEALNRIIAKTLPLSADLQRFVQVVFNVYRFKFYHDFKNTQPHSIDIRPLVLLGQQLQHQQDVEPALEELLDL
AEQLNTESGITGLEIQQQQIIEAEQPVEVEPAAIADTCVDAVASSDDSLIEETMAIFLEEAEEHLQTIDTFLQQDEPSDQ
SYNQLIRALHTLRGSSSMAHIQQVFEASSKVETLFKTLMQDELESTSNETALLTHYAEFVRDYLHTLHQKGSQQQLDKID
QKFNQAWENYGFNIEEIAHEAQHPQGVVTSLLQLDIENLLNADYEFEKRVKLEFPVYIQALITEASSLIEHTHNRAAQGV
HDYVLQLKPAYEQLLEKPELLHLDYAFDIFGQAHQQVIHLFDTLAAGQRVSLGQEQLNVIHELQDFVQQDIETAITDKKV
SSELSADKVSAEPETVSIEPVAVSEPNVSTFDLSSISARIQQDHQHLDSEQANRNFDADLLDIFLEEADELLVGIDADLN
TWSQQQSNTSALNNLMRYLHTLKGGANMVQATHMGLIAHELETIYQRLIHGQIHSSENMIQIIRLVQDDIADRIQTLRDE
AVDYPATEVIELLGNIEQVLQGVPQQQPESATRTTSVDSTLAQVVAEPPTEVVEHELTADHLESVALGEPTSGVESDAVV
AEEQLQDSTSAANDALESQASISNTNVDIDNTKPYQDTDPDDVQSLVEATFYEEAAELLDAGQQLLNRWFDERTNRSILL
QLQRTVHSLKGGARMAELEPVAVIASHLENAFEQFAVKAFSSNAYDHLLLTAFTWLKAAIFERSYNNYDGLKHTLERLEF
VDTNAQIPTKLARADLFSQEQVMEFVQGDGTEPPSMLGEWDNTVQADDSNEMIRVSADLIEKMINLSGENAINRSRIQMD
LGQLGNTLVEMELAIQRLADQLRRMEGELESQIIAKHGAENLRYIDFDPLEMDQYSSLNQLSKSLAESASDLVDFKTTLS
DKIRDTEGLLLQQSRIQAEIQESLMRTRLVPFSRLLPRLQRIVRQTASSLNRPAELVVNNTEGELDRNILERLVTPLEHM
LRNAVDHGVEDREERLKLGKPEIGRIELNISRQGTDVLVSFSDDGKGIDVNKIKAKALENGLMTEDQKLEAQEILQYIFH
PGFSTATSVTQISGRGVGLDVVQSSIKALGGHVSVDSTFGSGTTFTIRVPTTVAVSDALMVKVGDQQFALPLAQIDRIVR
IAPATLERYFHGQDDYFNIDNTPYRLRYLAEFVSNQPIPKLSGIAHSLPVLLVKGAHGQTIALLVDQLVGSRAQIVVKPI
GRQFASIGAVAGATILGDGHVCLILDGQNIARQIQSTQRNKQVVEGREKTRHTDERRLIMIVDDSVTVRKVTSRLLERQG
FDVVTAKDGVDAMEQLENVKPDLMLLDIEMPRMDGFEVTNLVRHHELHQDMPIIMITSRTGEKHRERALSLGVTHYMGKP
FQESELLENIEALLETASGSY

Nucleotide


Download         Length: 4626 bp        

>NTDB_id=634823 LSO60_RS13555 WP_151732154.1 2845310..2849935(-) (chpA) [Acinetobacter ursingii strain RIVM_C010559]
ATGAAAGAAATATTAAAACATCTTGTTGAAAAAATAAGCTTACCTGAAGACAGTTTTCTTGATCAGGATGAAGAAATTCT
TGAAATTTTTATTGAAGAATTAGAAGAAATTTTTCAAGAATTGGGTCAACTTATTCCGCAGTGGGTGGCTGATTCTGATG
AGCAGCAGGTTTTAGCGGACGTTCGTCGCCATTTTCATACTCTAAAAGGGTCTGGTCGAATGGTGGGGGCGAAATCTTCC
AGTGAACTGGCGTGGACAGTTGAAGAAGCACTCAATCGAATTATTGCCAAAACTTTGCCATTAAGTGCAGATTTACAACG
TTTTGTGCAAGTGGTATTTAATGTTTATCGTTTTAAATTTTATCATGATTTTAAAAATACCCAGCCACACTCTATCGATA
TTCGTCCATTGGTTTTGTTGGGACAGCAGTTACAACACCAACAAGACGTCGAGCCTGCTTTAGAAGAATTACTCGATTTA
GCTGAACAGTTAAATACAGAATCTGGAATTACAGGGCTCGAAATTCAGCAACAACAGATCATTGAAGCTGAACAGCCAGT
TGAAGTAGAGCCTGCTGCCATAGCTGACACCTGTGTGGACGCAGTTGCTTCATCAGATGATAGTCTGATTGAAGAAACCA
TGGCGATTTTCCTTGAAGAAGCAGAAGAACATCTACAAACAATTGATACTTTTTTACAGCAAGATGAGCCATCAGATCAA
AGTTATAATCAATTGATTCGCGCTTTGCATACTTTGCGCGGTAGTTCATCGATGGCGCATATTCAGCAAGTATTTGAAGC
CAGCAGCAAGGTAGAAACGCTGTTTAAAACCTTGATGCAAGATGAGCTTGAGTCGACTTCAAATGAAACAGCGCTCTTAA
CCCACTACGCTGAATTTGTTCGAGATTATCTACATACACTGCACCAAAAGGGCTCTCAACAACAGCTTGACAAAATTGAT
CAAAAATTTAATCAAGCATGGGAAAACTATGGCTTTAATATCGAAGAAATCGCACATGAAGCACAGCATCCACAAGGTGT
TGTCACTTCACTATTGCAATTAGATATTGAAAATCTACTGAATGCAGACTATGAGTTTGAAAAACGCGTCAAACTGGAAT
TCCCTGTCTATATTCAAGCATTGATTACCGAGGCAAGTTCTTTAATTGAGCATACGCATAATCGAGCAGCTCAAGGCGTT
CATGATTATGTCTTGCAATTAAAGCCTGCTTATGAACAATTACTTGAAAAACCTGAATTACTGCATCTGGATTATGCCTT
TGATATTTTTGGACAGGCACACCAGCAAGTCATTCATTTATTTGATACCTTGGCAGCAGGGCAGCGAGTAAGCTTGGGAC
AAGAGCAACTCAATGTGATTCATGAGTTGCAAGACTTTGTTCAACAAGATATTGAAACAGCGATTACGGATAAGAAAGTA
TCATCTGAGCTAAGTGCTGATAAAGTAAGTGCTGAACCTGAGACTGTTTCCATTGAGCCTGTTGCGGTATCAGAGCCAAA
TGTTTCAACATTTGATTTATCGTCAATTTCTGCACGTATTCAACAAGATCATCAGCACCTAGATTCAGAGCAAGCCAATC
GTAATTTCGATGCAGACCTTCTCGATATCTTTTTAGAAGAAGCTGATGAGCTGTTGGTCGGTATTGACGCAGACTTAAAC
ACTTGGTCGCAGCAACAAAGTAATACGTCTGCCTTGAATAATTTGATGCGCTATTTACACACCTTAAAAGGTGGCGCAAA
TATGGTTCAGGCAACCCATATGGGACTGATTGCGCATGAGTTAGAAACCATTTATCAACGCTTGATTCATGGGCAAATAC
ATTCTTCTGAAAATATGATACAGATTATTCGTCTGGTACAAGATGATATTGCTGATCGGATTCAAACGTTGCGTGATGAA
GCAGTAGATTATCCAGCGACAGAAGTGATTGAGTTGCTTGGAAATATTGAGCAGGTTCTACAAGGGGTACCACAGCAACA
GCCTGAGAGTGCAACGCGGACTACTTCTGTTGATAGTACCTTGGCGCAAGTTGTTGCTGAGCCACCAACTGAAGTTGTTG
AGCATGAATTAACGGCAGATCATCTTGAATCAGTTGCTCTTGGTGAACCAACATCAGGCGTGGAGTCTGATGCAGTTGTT
GCTGAGGAACAATTACAGGATTCGACTTCCGCTGCGAATGATGCGCTAGAAAGTCAAGCATCGATTTCAAATACCAATGT
TGATATCGATAATACCAAACCGTATCAAGATACAGATCCTGATGATGTTCAATCTTTGGTGGAAGCGACTTTCTATGAAG
AAGCGGCAGAGTTGCTTGATGCTGGACAGCAACTTCTCAATCGCTGGTTTGATGAACGGACTAACCGAAGTATTTTGCTT
CAATTGCAACGTACAGTGCATAGCTTAAAAGGTGGTGCACGAATGGCAGAATTAGAGCCTGTTGCAGTAATTGCCTCACA
TCTTGAAAATGCCTTTGAGCAATTTGCAGTAAAAGCCTTTAGTTCCAATGCTTATGACCATCTCTTGCTGACGGCATTTA
CATGGTTAAAGGCAGCTATTTTTGAACGTTCATATAATAACTATGATGGTTTAAAGCATACCTTAGAACGTCTTGAATTT
GTCGATACCAATGCGCAAATTCCAACTAAACTGGCTCGCGCGGATCTATTCTCGCAAGAACAAGTGATGGAGTTTGTACA
GGGAGATGGTACAGAACCGCCATCTATGCTGGGTGAATGGGACAACACCGTACAGGCTGATGATTCAAATGAGATGATCC
GTGTTTCTGCGGATCTGATCGAAAAAATGATTAACTTGTCTGGTGAAAATGCCATTAACCGTTCGCGTATCCAAATGGAT
TTGGGACAGTTAGGCAATACACTGGTCGAAATGGAATTGGCGATTCAACGTTTGGCAGATCAGTTACGCCGAATGGAAGG
CGAATTAGAAAGTCAGATTATCGCCAAGCATGGGGCAGAAAACTTACGTTATATCGACTTTGACCCATTAGAAATGGATC
AATATTCATCATTGAATCAACTGTCAAAATCACTTGCTGAATCTGCATCGGATTTGGTTGACTTCAAAACCACATTATCC
GACAAAATTCGTGATACAGAAGGTTTGTTATTACAACAATCACGTATTCAGGCTGAAATTCAGGAAAGTCTGATGCGTAC
CCGATTAGTTCCGTTCTCACGACTTTTACCTCGCTTACAGCGTATTGTGCGTCAGACTGCAAGTAGTTTGAACCGTCCAG
CTGAATTGGTGGTCAATAATACCGAAGGCGAACTGGATCGAAATATCTTGGAACGCTTGGTCACGCCACTTGAACACATG
CTGCGAAATGCAGTCGATCATGGGGTAGAAGATCGTGAAGAGCGTTTAAAACTGGGTAAACCTGAAATAGGGCGTATTGA
GCTAAATATTAGCCGCCAAGGAACAGATGTTCTGGTGAGCTTTAGCGATGATGGTAAAGGTATTGATGTTAATAAAATCA
AAGCCAAAGCTTTAGAAAATGGTTTGATGACTGAGGATCAAAAACTCGAAGCACAGGAAATTTTGCAGTACATTTTCCAT
CCTGGGTTTAGTACAGCGACCTCAGTGACCCAAATTTCAGGACGTGGTGTTGGTCTGGATGTGGTGCAAAGTAGTATTAA
GGCGCTTGGTGGTCATGTTAGTGTCGATTCAACATTCGGCTCTGGTACCACTTTTACTATTCGTGTACCAACGACTGTGG
CAGTGAGTGATGCACTCATGGTGAAAGTCGGTGATCAGCAATTTGCCTTGCCTTTGGCTCAGATTGACCGAATTGTGCGT
ATTGCGCCTGCAACTCTTGAACGCTATTTCCATGGTCAGGATGATTATTTTAATATCGATAATACTCCATATCGTTTACG
TTATCTGGCGGAGTTTGTCAGCAATCAGCCTATTCCAAAATTATCTGGTATTGCACATTCATTACCTGTGTTATTGGTTA
AAGGCGCGCATGGTCAGACCATTGCGTTATTGGTCGATCAATTGGTCGGTTCGCGTGCACAAATTGTAGTGAAACCAATC
GGACGACAGTTCGCAAGTATTGGCGCTGTTGCTGGGGCGACAATTTTAGGTGATGGTCATGTTTGTCTCATTCTGGATGG
ACAAAACATTGCACGTCAGATCCAATCGACACAACGTAATAAACAAGTTGTTGAAGGCAGAGAAAAAACACGTCATACCG
ATGAACGTCGTCTGATCATGATCGTAGATGACTCGGTGACTGTCCGTAAAGTTACTTCGCGGCTACTGGAACGTCAGGGC
TTTGATGTGGTGACGGCCAAAGATGGTGTCGACGCCATGGAACAGCTTGAAAATGTCAAACCTGATTTGATGTTGCTGGA
TATTGAAATGCCTCGCATGGATGGTTTTGAGGTGACTAATCTGGTACGCCATCATGAGTTACATCAGGATATGCCAATTA
TCATGATCACATCACGTACTGGTGAAAAACATCGTGAACGTGCATTGTCACTTGGCGTAACGCATTACATGGGTAAACCG
TTCCAAGAATCAGAATTGCTTGAGAATATTGAAGCATTACTTGAAACAGCTTCAGGGAGTTACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.075

100

0.612