Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSO60_RS02570 Genome accession   NZ_CP089051
Coordinates   528730..529386 (-) Length   218 a.a.
NCBI ID   WP_263512831.1    Uniprot ID   A0AA46S425
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523730..534386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS02535 (LSO60_02535) mlaE 524051..524830 (+) 780 WP_004985283.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LSO60_RS02540 (LSO60_02540) - 524830..525513 (+) 684 WP_004985284.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LSO60_RS02545 (LSO60_02545) - 525532..526164 (+) 633 WP_263512828.1 phospholipid-binding protein MlaC -
  LSO60_RS02550 (LSO60_02550) - 526178..526471 (+) 294 WP_004985287.1 lipid asymmetry maintenance protein MlaB -
  LSO60_RS02555 (LSO60_02555) - 526527..527540 (-) 1014 WP_004985290.1 CorA family divalent cation transporter -
  LSO60_RS02560 (LSO60_02560) - 527698..528282 (+) 585 WP_263512829.1 TIGR00730 family Rossman fold protein -
  LSO60_RS02565 (LSO60_02565) - 528298..528723 (+) 426 WP_263512830.1 NUDIX domain-containing protein -
  LSO60_RS02570 (LSO60_02570) comF 528730..529386 (-) 657 WP_263512831.1 ComF family protein Machinery gene
  LSO60_RS02575 (LSO60_02575) recG 529373..531418 (-) 2046 WP_263512832.1 ATP-dependent DNA helicase RecG -
  LSO60_RS02580 (LSO60_02580) - 531457..532290 (+) 834 WP_263512833.1 NAD-dependent epimerase/dehydratase family protein -
  LSO60_RS02585 (LSO60_02585) - 532361..533347 (+) 987 WP_263512834.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25500.02 Da        Isoelectric Point: 9.5015

>NTDB_id=634806 LSO60_RS02570 WP_263512831.1 528730..529386(-) (comF) [Acinetobacter ursingii strain RIVM_C010559]
MPMFDDIKASMQQLGQKLLPCRLCESSPRLTHYLLCKSCWQQLPWLKQTIHRHELQIMAACYYNYPIDRILQQFKYEQKL
HHQPLLDQLLTQMKYPKVQAIVPMPISEARLIERGYNQSLLLAQQLAKKLNIPVWQPIHRLEQHSQKGLNRIERIQGIEQ
QFLLLEKPKIRYRKVLIIDDVVTTGSSIYALHQALQQLGCQQIYACCIAAATNQNAKT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=634806 LSO60_RS02570 WP_263512831.1 528730..529386(-) (comF) [Acinetobacter ursingii strain RIVM_C010559]
ATGCCTATGTTTGATGATATTAAAGCCTCCATGCAACAGCTTGGGCAAAAACTTTTACCTTGCCGTCTGTGTGAATCCAG
TCCACGTTTAACGCATTATCTGCTGTGTAAAAGTTGCTGGCAGCAATTGCCTTGGCTCAAGCAAACCATCCATCGGCATG
AATTACAGATCATGGCGGCCTGTTACTATAATTATCCGATCGATCGTATTTTACAGCAGTTTAAATACGAGCAAAAATTA
CATCACCAGCCCTTACTCGATCAACTCCTTACCCAGATGAAATATCCTAAAGTTCAGGCGATTGTCCCTATGCCGATCTC
GGAGGCACGTTTGATCGAACGCGGTTACAATCAATCTTTGCTCTTGGCACAACAACTGGCAAAGAAACTCAATATTCCCG
TCTGGCAACCAATTCATCGACTTGAACAACATTCTCAAAAAGGACTGAATCGAATAGAGCGGATTCAAGGCATAGAACAG
CAGTTTTTGCTGTTAGAGAAACCCAAAATTCGCTACCGAAAAGTCTTGATCATTGATGATGTCGTCACGACTGGCAGCTC
AATTTATGCCTTGCATCAAGCGTTACAACAATTAGGATGCCAGCAGATTTACGCATGTTGTATTGCAGCAGCAACAAATC
AAAACGCCAAAACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.706

93.578

0.606
  comF Acinetobacter baumannii D1279779

64.851

92.661

0.601