Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LSO58_RS06605 Genome accession   NZ_CP089044
Coordinates   1416370..1416903 (+) Length   177 a.a.
NCBI ID   WP_004988651.1    Uniprot ID   A0AA46P7Y1
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411370..1421903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS06595 (LSO58_06575) - 1411652..1412398 (+) 747 WP_004988658.1 hypothetical protein -
  LSO58_RS06600 (LSO58_06580) - 1412415..1416365 (+) 3951 WP_004988654.1 hypothetical protein -
  LSO58_RS06605 (LSO58_06585) comE 1416370..1416903 (+) 534 WP_004988651.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LSO58_RS06610 (LSO58_06590) pilE 1416897..1417352 (+) 456 WP_004988647.1 type IV pilin protein Machinery gene
  LSO58_RS19380 - 1417732..1417863 (+) 132 Protein_1282 IS3 family transposase -
  LSO58_RS06615 (LSO58_06595) tnpA 1418051..1418479 (+) 429 WP_004985693.1 IS66-like element accessory protein TnpA -
  LSO58_RS06620 (LSO58_06600) tnpB 1418476..1418811 (+) 336 WP_004988643.1 IS66 family insertion sequence element accessory protein TnpB -
  LSO58_RS06625 (LSO58_06605) tnpC 1418886..1420493 (+) 1608 WP_004985690.1 IS66 family transposase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19542.16 Da        Isoelectric Point: 9.2551

>NTDB_id=634777 LSO58_RS06605 WP_004988651.1 1416370..1416903(+) (comE) [Acinetobacter ursingii strain RIVM_C010761]
MKKETGKIRSHHGYGFTLIELMVTVAIVAIFAAIAFPSYQAYTRKAYAAQTQQEIEKLAEQLERHKARNFNYKGFDASFL
YKDASGVLISNFNNNKQELSLPVDGSSTKYILSIVDQTEGNPLLINSTSLGQGWAIKALSTDDKNDSFLKTSNGIQCKNK
TKANITFSGCGVGSEIW

Nucleotide


Download         Length: 534 bp        

>NTDB_id=634777 LSO58_RS06605 WP_004988651.1 1416370..1416903(+) (comE) [Acinetobacter ursingii strain RIVM_C010761]
ATGAAAAAAGAAACTGGGAAAATACGCTCTCACCACGGCTATGGTTTTACTTTAATTGAGCTGATGGTAACAGTTGCAAT
TGTCGCGATTTTTGCTGCAATTGCATTCCCAAGTTATCAAGCTTATACAAGAAAAGCTTATGCTGCACAGACTCAACAGG
AAATTGAAAAACTGGCTGAGCAATTAGAACGACACAAAGCCCGTAACTTTAATTATAAAGGCTTTGATGCAAGTTTTTTG
TATAAAGATGCAAGTGGTGTTTTAATTTCAAATTTTAATAACAATAAACAAGAGCTTAGTCTTCCAGTGGATGGCTCTTC
TACGAAATACATACTTTCTATTGTAGATCAAACGGAGGGGAATCCTCTGTTGATTAACTCAACATCTTTGGGGCAGGGCT
GGGCAATTAAGGCATTAAGCACTGATGATAAGAATGATAGTTTTTTAAAAACTAGCAACGGTATTCAATGTAAAAATAAA
ACCAAAGCAAATATCACTTTTTCGGGATGTGGTGTGGGGAGCGAGATATGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(37-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(15-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

59.88

94.35

0.565
  pilY2 Acinetobacter baumannii D1279779

40.936

96.61

0.395