Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSO58_RS02410 Genome accession   NZ_CP089044
Coordinates   530510..531166 (-) Length   218 a.a.
NCBI ID   WP_004985298.1    Uniprot ID   A0AA46NQL1
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525510..536166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS02375 (LSO58_02370) mlaE 525831..526610 (+) 780 WP_004985283.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LSO58_RS02380 (LSO58_02375) - 526610..527293 (+) 684 WP_004985284.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LSO58_RS02385 (LSO58_02380) - 527312..527944 (+) 633 WP_004985286.1 phospholipid-binding protein MlaC -
  LSO58_RS02390 (LSO58_02385) - 527958..528251 (+) 294 WP_004985287.1 lipid asymmetry maintenance protein MlaB -
  LSO58_RS02395 (LSO58_02390) - 528307..529320 (-) 1014 WP_004985290.1 CorA family divalent cation transporter -
  LSO58_RS02400 (LSO58_02395) - 529478..530062 (+) 585 WP_010588689.1 TIGR00730 family Rossman fold protein -
  LSO58_RS02405 (LSO58_02400) - 530078..530503 (+) 426 WP_004985294.1 NUDIX hydrolase -
  LSO58_RS02410 (LSO58_02405) comF 530510..531166 (-) 657 WP_004985298.1 ComF family protein Machinery gene
  LSO58_RS02415 (LSO58_02410) recG 531153..533198 (-) 2046 WP_004985300.1 ATP-dependent DNA helicase RecG -
  LSO58_RS02420 (LSO58_02415) - 533237..534070 (+) 834 WP_004985301.1 NAD-dependent epimerase/dehydratase family protein -
  LSO58_RS02425 (LSO58_02420) - 534141..535127 (+) 987 WP_004985303.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25493.03 Da        Isoelectric Point: 9.1745

>NTDB_id=634767 LSO58_RS02410 WP_004985298.1 530510..531166(-) (comF) [Acinetobacter ursingii strain RIVM_C010761]
MLMFDDIKASMQQLGQKLLPCRLCESSPRLKHYVLCKSCWEQLPWLKQPIHRHELQIMAACYYDYPIDRILQQFKYEQKL
HHQPLLDQLLAQMKYPKVQAIVPMPISEARLIERGYNQSLLLAQQLAKKLNIPVWQPIHRLEQHSQKGLNRIERIQGIEQ
QFVLLEKPKIRYRKVLIIDDVVTTGSSIYALHQALHELGCQQIYACCIAAATNQNAKT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=634767 LSO58_RS02410 WP_004985298.1 530510..531166(-) (comF) [Acinetobacter ursingii strain RIVM_C010761]
ATGCTTATGTTTGATGATATTAAAGCCTCCATGCAACAGCTTGGGCAAAAACTTTTACCCTGCCGTCTGTGTGAATCCAG
TCCACGTTTAAAGCATTATGTTCTATGTAAAAGTTGCTGGGAGCAATTGCCTTGGCTGAAACAGCCGATCCATCGGCATG
AATTACAGATCATGGCGGCCTGTTACTATGATTATCCGATCGATCGTATTTTACAGCAGTTTAAATACGAACAAAAATTA
CATCACCAACCCTTACTCGATCAACTCCTTGCCCAGATGAAATATCCTAAAGTTCAGGCGATTGTCCCCATGCCGATCTC
GGAGGCACGTTTGATCGAACGCGGTTATAATCAATCTTTGCTCTTGGCACAACAACTGGCAAAGAAACTCAATATTCCCG
TCTGGCAACCGATTCATCGACTTGAACAACATTCTCAAAAAGGACTGAATCGAATAGAGCGGATTCAAGGCATAGAACAG
CAGTTTGTTCTGTTAGAGAAACCCAAAATTCGCTACCGAAAAGTCTTGATCATTGATGACGTCGTCACGACTGGCAGCTC
AATTTATGCGTTGCATCAAGCATTACACGAATTAGGATGCCAGCAGATTTACGCATGTTGTATTGCAGCAGCAACAAATC
AAAACGCCAAAACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

65.196

93.578

0.61
  comF Acinetobacter baumannii D1279779

64.706

93.578

0.606