Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSO59_RS02360 Genome accession   NZ_CP089038
Coordinates   488428..489084 (-) Length   218 a.a.
NCBI ID   WP_104795180.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483428..494084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS02325 (LSO59_02320) mlaE 483749..484528 (+) 780 WP_004985283.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LSO59_RS02330 (LSO59_02325) - 484528..485211 (+) 684 WP_004995153.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LSO59_RS02335 (LSO59_02330) - 485230..485862 (+) 633 WP_034698920.1 phospholipid-binding protein MlaC -
  LSO59_RS02340 (LSO59_02335) - 485876..486169 (+) 294 WP_004985287.1 lipid asymmetry maintenance protein MlaB -
  LSO59_RS02345 (LSO59_02340) - 486225..487238 (-) 1014 WP_004985290.1 CorA family divalent cation transporter -
  LSO59_RS02350 (LSO59_02345) - 487396..487980 (+) 585 WP_104795178.1 TIGR00730 family Rossman fold protein -
  LSO59_RS02355 (LSO59_02350) - 488011..488421 (+) 411 WP_171327165.1 NUDIX hydrolase -
  LSO59_RS02360 (LSO59_02355) comF 488428..489084 (-) 657 WP_104795180.1 ComF family protein Machinery gene
  LSO59_RS02365 (LSO59_02360) recG 489071..491116 (-) 2046 WP_104795181.1 ATP-dependent DNA helicase RecG -
  LSO59_RS02370 (LSO59_02365) - 491155..491988 (+) 834 WP_104795182.1 NAD-dependent epimerase/dehydratase family protein -
  LSO59_RS02375 (LSO59_02370) - 492059..493045 (+) 987 WP_104795183.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25471.96 Da        Isoelectric Point: 9.3474

>NTDB_id=634726 LSO59_RS02360 WP_104795180.1 488428..489084(-) (comF) [Acinetobacter ursingii strain RIVM_C011601]
MLMFDDIKASMQQLGQKLLPCRLCESSPRLKHYILCKSCWQQLPWLKQTVHRHELQIMAACYYDYPIDRILQQFKYEQKL
HHQPLLDQLLAQMKYPKVQAIVPMPISDARLIERGYNQSLLLAQQLAKKLNIPVWQPIHRLEQHSQKGLNRIERIQGIEQ
QFVLLEKPQIRYRKVLIIDDVVTTGSSIYALHQALQQLGCQQIYACCIAAATNQNAKT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=634726 LSO59_RS02360 WP_104795180.1 488428..489084(-) (comF) [Acinetobacter ursingii strain RIVM_C011601]
ATGCTTATGTTTGATGATATTAAAGCCTCCATGCAACAGCTTGGGCAAAAACTTTTACCTTGCCGTTTGTGTGAATCCAG
TCCACGTTTAAAGCATTATATTCTATGTAAAAGTTGCTGGCAGCAACTGCCTTGGCTCAAGCAAACCGTCCATCGGCATG
AATTACAGATCATGGCGGCCTGTTACTATGATTATCCGATCGATCGTATTTTACAGCAGTTTAAATACGAACAAAAATTA
CATCACCAACCCTTACTCGATCAACTCCTTGCCCAGATGAAATATCCTAAAGTTCAGGCGATTGTCCCTATGCCGATCTC
AGACGCACGTTTGATCGAACGCGGTTACAATCAATCTTTGCTCTTGGCACAACAACTGGCAAAGAAACTCAATATTCCCG
TCTGGCAACCGATTCATCGACTTGAACAACATTCTCAAAAAGGACTGAATCGAATAGAGCGGATTCAAGGCATAGAACAG
CAGTTTGTTCTCTTAGAGAAACCCCAAATTCGCTACCGAAAAGTTTTGATCATTGATGATGTCGTCACGACTGGCAGCTC
AATTTATGCATTACATCAAGCATTACAACAATTAGGATGCCAGCAGATTTACGCATGTTGTATTGCAGCAGCAACAAATC
AAAACGCCAAAACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.706

93.578

0.606
  comF Acinetobacter baumannii D1279779

64.706

93.578

0.606