Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   N7761_RS06015 Genome accession   NZ_CP104882
Coordinates   1180616..1181857 (-) Length   413 a.a.
NCBI ID   WP_005570344.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175616..1186857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS05985 (N7761_05985) cueR 1175913..1176299 (-) 387 WP_005547504.1 Cu(I)-responsive transcriptional regulator -
  N7761_RS05990 (N7761_05990) - 1176394..1176606 (+) 213 WP_005547502.1 heavy-metal-associated domain-containing protein -
  N7761_RS05995 (N7761_05995) - 1176693..1178852 (+) 2160 WP_262088895.1 cation-translocating P-type ATPase -
  N7761_RS06000 (N7761_06000) - 1178925..1179770 (+) 846 WP_005547497.1 DUF817 domain-containing protein -
  N7761_RS06005 (N7761_06005) - 1179887..1180237 (+) 351 WP_033001010.1 type II toxin-antitoxin system RelE/ParE family toxin -
  N7761_RS06010 (N7761_06010) - 1180230..1180553 (+) 324 WP_005547493.1 helix-turn-helix domain-containing protein -
  N7761_RS06015 (N7761_06015) clpX 1180616..1181857 (-) 1242 WP_005570344.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  N7761_RS06020 (N7761_06020) clpP 1181867..1182448 (-) 582 WP_005542551.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  N7761_RS06025 (N7761_06025) - 1182690..1184291 (-) 1602 WP_014167425.1 phosphoethanolamine transferase -
  N7761_RS06030 (N7761_06030) gshAB 1184523..1186796 (+) 2274 WP_005568011.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45690.25 Da        Isoelectric Point: 4.6428

>NTDB_id=634641 N7761_RS06015 WP_005570344.1 1180616..1181857(-) (clpX) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MIKDKELHCSFCGKEQDEVNKLIAGTSGYICNECIELCHDMLLNEEHGEEAEAESAKEQQELPTPHQIRAHLDDYVIGQD
YAQKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCDYDIERAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRIDTSK
ILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLPVVAPLSELDEEAL
VRILTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGARGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENV
INDNQSPELIYSN

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=634641 N7761_RS06015 WP_005570344.1 1180616..1181857(-) (clpX) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGATAAAAGATAAAGAATTACACTGTTCTTTCTGCGGCAAAGAACAAGACGAAGTGAATAAACTTATCGCCGGCACTTC
CGGTTACATTTGTAACGAATGTATCGAACTGTGCCACGATATGCTGCTCAACGAAGAACATGGCGAAGAAGCGGAAGCTG
AAAGCGCAAAAGAGCAACAGGAATTACCGACGCCCCACCAAATCCGAGCCCATTTGGACGATTATGTCATCGGTCAGGAT
TATGCCCAAAAAGTGCTGGCGGTGGCGGTGTATAACCACTACAAACGCCTACGCACCAAACATCAGACGAACGATGTGGA
ACTCGGTAAAAGCAACATTTTGCTTATCGGCCCGACCGGTAGCGGCAAAACCTTATTGGCAGAAACCATGGCGCGTATGT
TGAACGTGCCTTTCGCCATGGCGGACGCCACTACCTTAACGGAAGCCGGTTATGTAGGTGAAGACGTGGAAAACGTGTTG
CAGAAATTGCTACAAAACTGCGATTACGACATTGAACGCGCGGAACAAGGCATTATCTACATCGACGAAATCGACAAAAT
CACCCGCAAATCGGAAAATCCGTCCATTACCCGTGATGTCTCCGGCGAAGGCGTACAACAAGCCTTATTAAAACTCATCG
AAGGCACCATCGCCTCCATTCCGCCACAAGGCGGACGCAAACACCCGCAACAGGAAATGTTACGCATCGACACCTCCAAA
ATCCTATTCATTTGCGGCGGTGCGTTTGCGGGCTTGGATAAAGTCATCGAAAAACGCACCAGCGTCGCCACCGCCATCGG
TTTCGGCGCCGAAATCAAGAGCGAAAAAGACAAAGCGACACTGACCGACTTATTCAAACAGGTGGAACCGGACGATTTAA
TGAAATACGGCTTAATCCCGGAATTTATCGGACGTTTGCCGGTGGTGGCGCCATTAAGCGAATTGGACGAAGAAGCCTTG
GTACGTATTCTCACCGAACCGAAAAATGCCCTGTGCAAGCAATATCAGGCATTGTTCGGTTTAGAAGAGGTGGCATTGGA
ATTCACCAACGAAGCCCTAACCGCAATGGCGAAAAAAGCCCTTGCCCGCAAAACCGGCGCCCGCGGCTTACGTTCCATCA
TCGAAGGCGTCTTGCTTGACACCATGTACGACTTGCCATCCTTGGAAGGCTTGAAAAAAGTCGTGGTCAACGAAAACGTC
ATCAACGACAACCAATCCCCGGAATTGATTTATTCCAACTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.314

98.789

0.586
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.815

98.063

0.538