Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   N7761_RS05865 Genome accession   NZ_CP104882
Coordinates   1152209..1152898 (-) Length   229 a.a.
NCBI ID   WP_005547547.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147209..1157898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS10620 - 1147598..1147760 (+) 163 Protein_1123 phosphoribosylformylglycinamidine synthase subunit PurQ -
  N7761_RS05835 (N7761_05835) - 1148038..1148592 (-) 555 WP_005540709.1 DUF5358 domain-containing protein -
  N7761_RS05840 (N7761_05840) raiA 1148741..1149064 (-) 324 WP_005540708.1 ribosome-associated translation inhibitor RaiA -
  N7761_RS05845 (N7761_05845) - 1149292..1150665 (-) 1374 WP_005547554.1 sodium:alanine symporter family protein -
  N7761_RS05850 (N7761_05850) - 1151062..1151334 (-) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  N7761_RS05855 (N7761_05855) yacG 1151334..1151546 (-) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  N7761_RS05860 (N7761_05860) coaE 1151536..1152159 (-) 624 WP_005547548.1 dephospho-CoA kinase -
  N7761_RS05865 (N7761_05865) pilD 1152209..1152898 (-) 690 WP_005547547.1 A24 family peptidase Machinery gene
  N7761_RS05870 (N7761_05870) pilC 1152895..1154118 (-) 1224 WP_005567968.1 type II secretion system F family protein Machinery gene
  N7761_RS05875 (N7761_05875) - 1154111..1155516 (-) 1406 Protein_1132 GspE/PulE family protein -
  N7761_RS05880 (N7761_05880) pilA 1155543..1155995 (-) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N7761_RS05885 (N7761_05885) ampD 1156117..1156671 (+) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  N7761_RS05890 (N7761_05890) nanQ 1157145..1157615 (-) 471 WP_005547536.1 N-acetylneuraminate anomerase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26018.72 Da        Isoelectric Point: 8.2297

>NTDB_id=634638 N7761_RS05865 WP_005547547.1 1152209..1152898(-) (pilD) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MMWLLFLLGGALCGWRVHRYVEHFADNLSREVHAAYTEIYPQNPPHFTAEKSILKPLKRHFSAPLYSLLFTLLFIICYAI
NEPLQALCFALYGALLIAISLVDWHYRLISPALCQALFTLGLGAAYWQIGTLTLEQSLQSAVVFFGVFYAIYHAAKWYYR
QEALGRGDYWLALGLGVFLPAHQFPVFLFLACFFGLLYAAYAKYQHRTLNAVPFGPFMSLAGVVCLLLN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=634638 N7761_RS05865 WP_005547547.1 1152209..1152898(-) (pilD) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGATGTGGCTACTTTTTTTGCTTGGTGGCGCACTATGCGGGTGGCGTGTTCATCGTTATGTAGAACATTTCGCCGATAA
CCTCAGCCGCGAGGTTCATGCCGCCTACACGGAAATTTACCCGCAAAACCCACCGCACTTTACAGCGGAAAAGTCGATTC
TGAAACCGCTTAAACGGCATTTTTCCGCGCCCCTTTACAGCCTTTTATTCACCTTGCTGTTCATTATTTGTTATGCCATC
AATGAACCGTTACAAGCCCTATGCTTTGCCCTTTATGGCGCCTTATTAATTGCCATTTCCCTAGTGGATTGGCACTATCG
CTTGATTTCACCCGCCTTATGCCAAGCCTTGTTTACCCTCGGTTTAGGCGCGGCATACTGGCAAATCGGCACATTAACAT
TGGAGCAAAGCCTGCAAAGTGCGGTTGTTTTTTTCGGTGTTTTTTATGCCATCTACCACGCCGCAAAATGGTACTACCGA
CAAGAAGCTCTCGGACGCGGCGATTATTGGTTGGCACTGGGCTTAGGCGTTTTTCTCCCGGCACACCAATTTCCTGTTTT
TTTATTCCTCGCCTGCTTTTTCGGCTTACTTTATGCTGCCTACGCCAAATACCAACATCGCACACTCAACGCCGTGCCTT
TCGGTCCCTTTATGTCCCTAGCCGGCGTGGTCTGTTTATTGCTTAATTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.301

100

0.393
  pilD Haemophilus influenzae Rd KW20

38.839

97.817

0.38