Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   N8A75_RS20165 Genome accession   NZ_CP104878
Coordinates   3731659..3731778 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   P71001
Organism   Bacillus subtilis strain 4ZT     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3726659..3736778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS20145 (N8A75_20145) albG 3726822..3727523 (+) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  N8A75_RS20150 (N8A75_20150) ywhL 3727529..3728905 (-) 1377 WP_015250987.1 YncE family protein -
  N8A75_RS20155 (N8A75_20155) ywhK 3728945..3730300 (-) 1356 WP_129110589.1 YncE family protein -
  N8A75_RS22055 - 3730297..3730527 (-) 231 Protein_3913 hypothetical protein -
  N8A75_RS20160 (N8A75_20160) rapF 3730530..3731675 (+) 1146 WP_262091130.1 response regulator aspartate phosphatase RapF Regulator
  N8A75_RS20165 (N8A75_20165) phrF 3731659..3731778 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  N8A75_RS20170 (N8A75_20170) ywhH 3731876..3732349 (+) 474 Protein_3916 YbaK/EbsC family protein -
  N8A75_RS20175 (N8A75_20175) speB 3732380..3733252 (-) 873 WP_003227545.1 agmatinase -
  N8A75_RS20180 (N8A75_20180) speE 3733313..3734143 (-) 831 WP_003227543.1 spermidine synthase -
  N8A75_RS20185 (N8A75_20185) pbpG 3734346..3736421 (+) 2076 WP_029726084.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=634603 N8A75_RS20165 WP_009968329.1 3731659..3731778(+) (phrF) [Bacillus subtilis strain 4ZT]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=634603 N8A75_RS20165 WP_009968329.1 3731659..3731778(+) (phrF) [Bacillus subtilis strain 4ZT]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P71001

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487