Detailed information NTG0634379

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LRK52_RS04535
• Genome accession: NZ_CP088980
• Coordinates: 1016988..1017845 (-)
• Length: 285 a.a.
• NCBI ID: WP_027490753.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW104-R5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1011988..1022845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK52_RS04505 (LRK52_04505)	lgt	1012394..1013212 (+)	819	WP_027490758.1	prolipoprotein diacylglyceryl transferase	-
LRK52_RS04510 (LRK52_04510)	-	1013303..1014316 (-)	1014	WP_027490757.1	TIGR00266 family protein	-
LRK52_RS04515 (LRK52_04515)	-	1014409..1015203 (+)	795	WP_027490756.1	thymidylate synthase	-
LRK52_RS04520 (LRK52_04520)	-	1015330..1015818 (+)	489	WP_015447031.1	dihydrofolate reductase	-
LRK52_RS04525 (LRK52_04525)	-	1015818..1016234 (+)	417	WP_027490755.1	NUDIX domain-containing protein	-
LRK52_RS04530 (LRK52_04530)	coaE	1016371..1016991 (-)	621	WP_027490754.1	dephospho-CoA kinase	-
LRK52_RS04535 (LRK52_04535)	pilD	1016988..1017845 (-)	858	WP_027490753.1	A24 family peptidase	Machinery gene
LRK52_RS04540 (LRK52_04540)	-	1017860..1018258 (-)	399	WP_008438584.1	endonuclease domain-containing protein	-
LRK52_RS04545 (LRK52_04545)	pilC	1018407..1019678 (-)	1272	WP_027490752.1	type II secretion system F family protein	Machinery gene
LRK52_RS04550 (LRK52_04550)	pilB	1019821..1021545 (-)	1725	WP_235645798.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LRK52_RS04555 (LRK52_04555)	-	1022179..1022421 (+)	243	WP_007513924.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
LRK52_RS04560 (LRK52_04560)	-	1022418..1022813 (+)	396	WP_007513922.1	type II toxin-antitoxin system VapC family toxin	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30868.10 Da
• Isoelectric Point: 8.1460

>NTDB_id=634379 LRK52_RS04535 WP_027490753.1 1016988..1017845(-) (pilD) [Rhodanobacter denitrificans strain FW104-R5]
MPELPLALWIALAGVLGLLVGSFLNVVILRLPARMAAAWRQEAWDVLELQADAVPLPPGIVREPSHCPHCKHPLSALDNI
PLLGWLLLRGRCRYCRAEISIQYPLVELLSGVLSAVIVWKFGPSWAALAGLALTWTLIALSGIDFRTQLLPDQLTLPLLW
LGLLLSLLPMFVTAPASILAAAIGYLSLWSVYWAFKLLTGKEGMGHGDFKLLAALGAWMGPVALLPVILLSSLIGALVGG
TLIALRKHEREIPMPFGPFIAAAGWVWFVAGADLLQGYMQLTGLR

Nucleotide

• Length: 858 bp

>NTDB_id=634379 LRK52_RS04535 WP_027490753.1 1016988..1017845(-) (pilD) [Rhodanobacter denitrificans strain FW104-R5]
ATGCCCGAACTTCCCCTTGCCCTGTGGATCGCCCTGGCCGGTGTGCTCGGCCTGCTGGTGGGCAGCTTTCTCAACGTGGT
GATCCTGCGCCTGCCAGCGCGCATGGCGGCAGCGTGGCGGCAGGAGGCGTGGGATGTGCTGGAGCTCCAGGCTGACGCCG
TGCCGCTGCCGCCGGGTATCGTGCGCGAGCCGTCGCATTGCCCGCACTGCAAGCACCCGTTGTCAGCGCTGGACAACATT
CCGCTGCTTGGCTGGCTGCTGCTGCGCGGGCGCTGCCGCTACTGCCGGGCGGAGATTTCGATCCAGTACCCGTTGGTGGA
ACTGCTCAGCGGCGTGCTGAGCGCGGTGATCGTGTGGAAATTCGGGCCGTCATGGGCGGCGCTGGCGGGGCTGGCGCTGA
CCTGGACGCTGATCGCGCTGTCCGGCATCGACTTCCGCACCCAGTTGTTGCCCGACCAGCTCACCCTGCCGCTGCTGTGG
CTGGGCCTGCTGCTGTCGCTGCTGCCGATGTTCGTCACCGCGCCGGCGTCGATCCTGGCCGCCGCGATCGGCTACCTCAG
CCTGTGGAGCGTGTACTGGGCGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCCATGGCGATTTCAAGCTGCTCGCCG
CGCTGGGCGCATGGATGGGGCCGGTGGCGCTGCTGCCGGTCATCCTGCTGTCGTCGCTGATCGGCGCGCTGGTCGGCGGC
ACCCTGATCGCGCTGCGCAAGCATGAGCGCGAGATTCCGATGCCGTTCGGCCCGTTCATCGCCGCCGCCGGCTGGGTCTG
GTTCGTGGCCGGCGCGGACCTGCTGCAGGGTTACATGCAACTGACCGGCCTGCGGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.735	95.439	0.484
pilD	Acinetobacter nosocomialis M2	49.27	96.14	0.474
pilD	Acinetobacter baumannii D1279779	48.905	96.14	0.47
pilD	Vibrio campbellii strain DS40M4	48.175	96.14	0.463
pilD	Neisseria gonorrhoeae MS11	48.669	92.281	0.449