Detailed information NTG0634374

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRK52_RS03475
• Genome accession: NZ_CP088980
• Coordinates: 778835..780223 (-)
• Length: 462 a.a.
• NCBI ID: WP_027490831.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW104-R5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 773835..785223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK52_RS03455 (LRK52_03455)	-	774117..774563 (+)	447	WP_027490835.1	response regulator	-
LRK52_RS03460 (LRK52_03460)	-	774661..776196 (+)	1536	WP_027490834.1	response regulator	-
LRK52_RS03465 (LRK52_03465)	-	776232..777563 (+)	1332	WP_027490833.1	FtsX-like permease family protein	-
LRK52_RS03470 (LRK52_03470)	-	777560..778825 (+)	1266	WP_027490832.1	FtsX-like permease family protein	-
LRK52_RS03475 (LRK52_03475)	pilR	778835..780223 (-)	1389	WP_027490831.1	sigma-54 dependent transcriptional regulator	Regulator
LRK52_RS03480 (LRK52_03480)	-	780393..782639 (-)	2247	WP_027485332.1	glycosyl hydrolase family 65 protein	-
LRK52_RS03485 (LRK52_03485)	-	782659..783927 (-)	1269	WP_027485333.1	MFS transporter	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49981.17 Da
• Isoelectric Point: 5.9821

>NTDB_id=634374 LRK52_RS03475 WP_027490831.1 778835..780223(-) (pilR) [Rhodanobacter denitrificans strain FW104-R5]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEVIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASVDKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGDSVGQLSPSAREALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAATGQ
PPAPVAAATGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=634374 LRK52_RS03475 WP_027490831.1 778835..780223(-) (pilR) [Rhodanobacter denitrificans strain FW104-R5]
ATGAACCCCCAGACCGTTTTGGTCATCGATGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCGCGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGGTCATCGAGCTGATCGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTACGCACCGCGCTGCGCCTCGCCGAGGAACGGCGCACCGGCGCCGCCGCGGCGAAGA
CCGGCGACTCCAGCGACCGCCTGATCGGCGACTCCACCGCCATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCGCGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCCCGGCTGATCCACGAGCAGGGCCC
GCGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATC
GCAAGGGCAGCTTCACCGGCGCCAGCGTGGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAAGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATCCTTTCCGCCACCCACAAGAACCTCGGCCAGCTGGTCGAACAGGGCCAGT
TCCGCCAGGACCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGCCG
CAGTTGTCCGCATTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGACAGCGTGGGCCAGCTGTCGCCGTCCGCACGCGA
GGCGCTGGAGGCGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGATCAGCCACGAGCCGGCCGCAACGGGACAG
CCGCCGGCACCCGTCGCGGCCGCCACCGGCGCGGACGGCGGCCTCGACGACTACATCAGCAACCTGGAGCGCACCGCCAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Response regulator receiver domain (Response_reg) (6-114)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.823	100	0.608
pilR	Acinetobacter baumannii strain A118	47.403	100	0.474