Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LRO84_RS10145 Genome accession   NZ_CP088955
Coordinates   2135758..2136138 (-) Length   126 a.a.
NCBI ID   WP_004642631.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2130758..2141138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS10115 (LRO84_10115) tadA 2130879..2131382 (-) 504 WP_231761253.1 tRNA adenosine(34) deaminase TadA -
  LRO84_RS10120 (LRO84_10120) - 2131388..2132512 (-) 1125 WP_231761254.1 enoyl-CoA hydratase/isomerase family protein -
  LRO84_RS10125 (LRO84_10125) ung 2132509..2133222 (-) 714 WP_231761255.1 uracil-DNA glycosylase -
  LRO84_RS10130 (LRO84_10130) - 2133272..2133868 (-) 597 WP_003651480.1 6-pyruvoyl trahydropterin synthase family protein -
  LRO84_RS10135 (LRO84_10135) gspK 2134098..2135057 (-) 960 WP_231761256.1 type II secretion system minor pseudopilin GspK -
  LRO84_RS10140 (LRO84_10140) xcpW 2135057..2135758 (-) 702 WP_231761257.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LRO84_RS10145 (LRO84_10145) xcpV 2135758..2136138 (-) 381 WP_004642631.1 type II secretion system minor pseudopilin GspI Machinery gene
  LRO84_RS10150 (LRO84_10150) - 2136128..2136682 (-) 555 WP_231761258.1 type II secretion system protein -
  LRO84_RS10155 (LRO84_10155) - 2136692..2137300 (-) 609 WP_004642629.1 TetR/AcrR family transcriptional regulator -
  LRO84_RS10160 (LRO84_10160) - 2137337..2138110 (-) 774 WP_005041098.1 TatD family hydrolase -
  LRO84_RS10165 (LRO84_10165) - 2138128..2138469 (-) 342 WP_003651467.1 PilZ domain-containing protein -
  LRO84_RS10170 (LRO84_10170) - 2138480..2139460 (-) 981 WP_231761259.1 DNA polymerase III subunit delta' -
  LRO84_RS10175 (LRO84_10175) kdsB 2139474..2140235 (-) 762 WP_231761260.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13930.08 Da        Isoelectric Point: 9.4463

>NTDB_id=634208 LRO84_RS10145 WP_004642631.1 2135758..2136138(-) (xcpV) [Acinetobacter calcoaceticus strain ARu19]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPIKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=634208 LRO84_RS10145 WP_004642631.1 2135758..2136138(-) (xcpV) [Acinetobacter calcoaceticus strain ARu19]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTAGCTTTAGCAATTTTTGCGGTAGCTGCTGTCGCGTTAACTAA
AGTGGCCATGCAATATACCCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTAG
CCTTAATGGAAATAAATCAAGAATGGCTTCAAGGCACTCAAAGTAAGCAGGTTACTTCTCAAGGGGAAACTTGGCAGATT
GATAAATCAGCTGAATCTACAGTCAGCCCTAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
AAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATAAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937