Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LRO84_RS02090 Genome accession   NZ_CP088955
Coordinates   444341..444970 (-) Length   209 a.a.
NCBI ID   WP_231763344.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439341..449970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS02055 (LRO84_02055) mlaE 439671..440447 (+) 777 WP_045433193.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LRO84_RS02060 (LRO84_02060) - 440447..441130 (+) 684 WP_231762475.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LRO84_RS02065 (LRO84_02065) - 441157..441798 (+) 642 WP_231762476.1 phospholipid-binding protein MlaC -
  LRO84_RS02070 (LRO84_02070) - 441810..442097 (+) 288 WP_080027838.1 lipid asymmetry maintenance protein MlaB -
  LRO84_RS02075 (LRO84_02075) - 442170..443183 (-) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  LRO84_RS02080 (LRO84_02080) - 443342..443923 (+) 582 WP_004639551.1 TIGR00730 family Rossman fold protein -
  LRO84_RS02085 (LRO84_02085) - 443937..444335 (+) 399 WP_231762477.1 NUDIX hydrolase -
  LRO84_RS02090 (LRO84_02090) comF 444341..444970 (-) 630 WP_231763344.1 ComF family protein Machinery gene
  LRO84_RS02095 (LRO84_02095) recG 444963..447008 (-) 2046 WP_231762478.1 ATP-dependent DNA helicase RecG -
  LRO84_RS02100 (LRO84_02100) - 447029..447844 (+) 816 WP_231762479.1 SDR family NAD(P)-dependent oxidoreductase -
  LRO84_RS02105 (LRO84_02105) - 447924..448907 (+) 984 WP_231762480.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24312.48 Da        Isoelectric Point: 9.4623

>NTDB_id=634199 LRO84_RS02090 WP_231763344.1 444341..444970(-) (comF) [Acinetobacter calcoaceticus strain ARu19]
MFSFLNPQHLIHSLSPCLLCESGVREKHSLCKDCWKQLPWLKQIIQRNDQSVLVACDYEYPVNRIIQQFKYEQKLHYQIL
LGEILQQLKFPKIQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAF
TQEKRRYRRVLIIDDVVTTGSSIYALNQVLKQLGCTTIHAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=634199 LRO84_RS02090 WP_231763344.1 444341..444970(-) (comF) [Acinetobacter calcoaceticus strain ARu19]
ATGTTTAGTTTCTTAAATCCGCAGCATCTTATCCACTCACTCTCACCGTGCTTGCTGTGTGAGTCAGGTGTGCGAGAAAA
ACATTCGCTCTGTAAGGACTGTTGGAAACAGTTACCATGGCTTAAACAAATAATTCAACGTAATGATCAATCAGTTCTGG
TGGCCTGTGATTATGAATATCCAGTCAATCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTG
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGATACAAGCTATTGTACCTATGCCGATTTCGAATCAACGCTTAAT
TGAACGTGGTTTCAATCAGTCACTATTACTCGCAAATATCTTAAGCAAGCAATTAAAAATACCTGTGTGGCAGCCAGTGC
AACGCCTTGCTGAGCATTCGCAAAAAGGACTTTCTCGACTGGAACGCTTTGAGAACATCGAACAACAATTCATTGCATTT
ACTCAAGAAAAAAGGCGTTATCGCCGTGTTCTGATTATTGATGATGTCGTTACCACCGGAAGTTCAATTTACGCCCTTAA
TCAGGTATTAAAGCAACTAGGATGTACAACCATTCATGCCGCTTGTTTAGCGGCAACTTTAACGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828