Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | LRO84_RS01645 | Genome accession | NZ_CP088955 |
| Coordinates | 353467..353910 (+) | Length | 147 a.a. |
| NCBI ID | WP_231762426.1 | Uniprot ID | - |
| Organism | Acinetobacter calcoaceticus strain ARu19 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 348467..358910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRO84_RS01625 (LRO84_01625) | - | 349851..350738 (+) | 888 | WP_005044026.1 | metal-dependent hydrolase | - |
| LRO84_RS01630 (LRO84_01630) | - | 350867..351457 (+) | 591 | WP_003653797.1 | LemA family protein | - |
| LRO84_RS01635 (LRO84_01635) | - | 351482..352561 (+) | 1080 | WP_231762424.1 | TPM domain-containing protein | - |
| LRO84_RS01640 (LRO84_01640) | - | 352555..353115 (+) | 561 | WP_231762425.1 | TPM domain-containing protein | - |
| LRO84_RS01645 (LRO84_01645) | comP | 353467..353910 (+) | 444 | WP_231762426.1 | pilin | Machinery gene |
| LRO84_RS01650 (LRO84_01650) | - | 354044..355696 (+) | 1653 | WP_231762427.1 | PglL family O-oligosaccharyltransferase | - |
| LRO84_RS01655 (LRO84_01655) | - | 355954..357582 (+) | 1629 | WP_231762428.1 | PglL family O-oligosaccharyltransferase | - |
| LRO84_RS01660 (LRO84_01660) | bfr | 357625..358089 (-) | 465 | WP_005038304.1 | heteropolymeric bacterioferritin subunit Bfr | - |
| LRO84_RS01665 (LRO84_01665) | - | 358335..358529 (-) | 195 | WP_004639703.1 | bacterioferritin-associated ferredoxin | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15206.42 Da Isoelectric Point: 8.9807
>NTDB_id=634191 LRO84_RS01645 WP_231762426.1 353467..353910(+) (comP) [Acinetobacter calcoaceticus strain ARu19]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTVIAENAGNGASSLILGVPNFSTTDSVSSI
SSNATTGAIQITYTSKVKSIVLTLTPYDGGGTTALSAGTVPTNQITWKCTVATPATNNKYVPANCRS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTVIAENAGNGASSLILGVPNFSTTDSVSSI
SSNATTGAIQITYTSKVKSIVLTLTPYDGGGTTALSAGTVPTNQITWKCTVATPATNNKYVPANCRS
Nucleotide
Download Length: 444 bp
>NTDB_id=634191 LRO84_RS01645 WP_231762426.1 353467..353910(+) (comP) [Acinetobacter calcoaceticus strain ARu19]
ATGAATGCACAAAAAGGTTTTACATTAATTGAGCTCATGATCGTGGTTGCGATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAGGATTATATTGTTCGTTCTAAAGTGACAGAAGGTTTAAATTTAGCATCTTCTTATAAAACTGTAATCG
CAGAGAATGCTGGAAATGGGGCTTCTAGTTTAATTTTAGGAGTTCCTAACTTTAGTACAACTGATAGCGTGTCATCAATT
TCATCAAATGCTACTACTGGGGCAATTCAGATAACCTATACTAGTAAAGTAAAAAGTATTGTACTTACTTTGACTCCTTA
TGATGGTGGTGGTACTACGGCATTATCTGCTGGAACAGTTCCAACAAATCAAATTACTTGGAAATGTACAGTCGCTACAC
CAGCAACTAATAATAAATATGTTCCAGCAAATTGCCGTAGCTAA
ATGAATGCACAAAAAGGTTTTACATTAATTGAGCTCATGATCGTGGTTGCGATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCTTATCAGGATTATATTGTTCGTTCTAAAGTGACAGAAGGTTTAAATTTAGCATCTTCTTATAAAACTGTAATCG
CAGAGAATGCTGGAAATGGGGCTTCTAGTTTAATTTTAGGAGTTCCTAACTTTAGTACAACTGATAGCGTGTCATCAATT
TCATCAAATGCTACTACTGGGGCAATTCAGATAACCTATACTAGTAAAGTAAAAAGTATTGTACTTACTTTGACTCCTTA
TGATGGTGGTGGTACTACGGCATTATCTGCTGGAACAGTTCCAACAAATCAAATTACTTGGAAATGTACAGTCGCTACAC
CAGCAACTAATAATAAATATGTTCCAGCAAATTGCCGTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
49.383 |
100 |
0.544 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
47.17 |
100 |
0.51 |
| pilA2 | Legionella pneumophila str. Paris |
47.619 |
100 |
0.476 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
47.619 |
100 |
0.476 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37.097 |
100 |
0.469 |
| pilA | Acinetobacter baumannii strain A118 |
46.154 |
97.279 |
0.449 |
| pilA | Pseudomonas aeruginosa PAK |
36.025 |
100 |
0.395 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.709 |
100 |
0.395 |