Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LRO55_RS10250 Genome accession   NZ_CP088954
Coordinates   2176632..2177012 (-) Length   126 a.a.
NCBI ID   WP_004642631.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2171632..2182012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS10220 (LRO55_10220) tadA 2171639..2172142 (-) 504 WP_004642637.1 tRNA adenosine(34) deaminase TadA -
  LRO55_RS10225 (LRO55_10225) - 2172148..2173272 (-) 1125 WP_231763526.1 enoyl-CoA hydratase/isomerase family protein -
  LRO55_RS10230 (LRO55_10230) ung 2173269..2173982 (-) 714 WP_231763527.1 uracil-DNA glycosylase -
  LRO55_RS10235 (LRO55_10235) - 2174032..2174628 (-) 597 WP_231763528.1 6-pyruvoyl trahydropterin synthase family protein -
  LRO55_RS10240 (LRO55_10240) gspK 2174858..2175817 (-) 960 WP_231763529.1 type II secretion system minor pseudopilin GspK -
  LRO55_RS10245 (LRO55_10245) xcpW 2175817..2176632 (-) 816 WP_231763530.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LRO55_RS10250 (LRO55_10250) xcpV 2176632..2177012 (-) 381 WP_004642631.1 type II secretion system minor pseudopilin GspI Machinery gene
  LRO55_RS10255 (LRO55_10255) - 2177002..2177556 (-) 555 WP_231763531.1 type II secretion system protein -
  LRO55_RS10260 (LRO55_10260) - 2177566..2178174 (-) 609 WP_004642629.1 TetR/AcrR family transcriptional regulator -
  LRO55_RS10265 (LRO55_10265) - 2178211..2178984 (-) 774 WP_231763532.1 TatD family hydrolase -
  LRO55_RS10270 (LRO55_10270) - 2179003..2179344 (-) 342 WP_231763533.1 PilZ domain-containing protein -
  LRO55_RS10275 (LRO55_10275) - 2179355..2180335 (-) 981 WP_231763534.1 DNA polymerase III subunit delta' -
  LRO55_RS10280 (LRO55_10280) kdsB 2180349..2181110 (-) 762 WP_231763535.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13930.08 Da        Isoelectric Point: 9.4463

>NTDB_id=634161 LRO55_RS10250 WP_004642631.1 2176632..2177012(-) (xcpV) [Acinetobacter calcoaceticus strain ACa13]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPIKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=634161 LRO55_RS10250 WP_004642631.1 2176632..2177012(-) (xcpV) [Acinetobacter calcoaceticus strain ACa13]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTAGCTTTAGCAATTTTTGCGGTAGCTGCTGTCGCGTTAACTAA
AGTGGCCATGCAATATACCCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTAG
CCTTAATGGAGATAAATCAAGAATGGCTTCAAGGCACTCAAAGTAAGCAGGTTACTTCTCAAGGGGAAACTTGGCAGATT
GATAAATCAGCTGAATCTACAGTCAGCCCTAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
AAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATAAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937