Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LRO55_RS03330 Genome accession   NZ_CP088954
Coordinates   677924..682420 (+) Length   1498 a.a.
NCBI ID   WP_231764639.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 672924..687420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS03305 (LRO55_03305) - 673362..674000 (-) 639 WP_231764638.1 hypothetical protein -
  LRO55_RS03310 (LRO55_03310) pilG 674286..674669 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LRO55_RS03315 (LRO55_03315) - 674693..675055 (+) 363 WP_005036319.1 response regulator -
  LRO55_RS03320 (LRO55_03320) - 675115..675651 (+) 537 WP_005309806.1 chemotaxis protein CheW -
  LRO55_RS03325 (LRO55_03325) - 675694..677775 (+) 2082 WP_017392491.1 methyl-accepting chemotaxis protein -
  LRO55_RS03330 (LRO55_03330) chpA 677924..682420 (+) 4497 WP_231764639.1 Hpt domain-containing protein Regulator
  LRO55_RS03335 (LRO55_03335) - 682420..682887 (+) 468 WP_004639007.1 hypothetical protein -
  LRO55_RS03340 (LRO55_03340) dapE 682924..684060 (-) 1137 WP_056483376.1 succinyl-diaminopimelate desuccinylase -
  LRO55_RS03345 (LRO55_03345) - 684186..684329 (-) 144 WP_003655297.1 entericidin A/B family lipoprotein -
  LRO55_RS03350 (LRO55_03350) - 684452..685333 (-) 882 WP_231764640.1 DUF1853 family protein -
  LRO55_RS03355 (LRO55_03355) - 685438..685797 (+) 360 WP_231764641.1 YbaN family protein -
  LRO55_RS03360 (LRO55_03360) elsL 686016..686519 (+) 504 WP_005036336.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1498 a.a.        Molecular weight: 171095.34 Da        Isoelectric Point: 4.4354

>NTDB_id=634156 LRO55_RS03330 WP_231764639.1 677924..682420(+) (chpA) [Acinetobacter calcoaceticus strain ACa13]
MKEILKTLTEAMMLPEDSYSQQDAEFLDIFVEEIEEIFVELQSLIHEWMQSKNVATLTEIRRHFHTLKGSGRMIAAKSSA
ELAWTVEDTLNRVINESLTLTPNIQQYVQLVFKFYFFKLVDDFKSKKEHAVDFRPLILLGQQLQQQQSLEPALEELLLLS
DTLTAETKTGLEVDDLEQESDNLTLETAIESEHNLAETLVLFMEEAEEHLATIDQFLEQEIHQHESYNALIRALHTLRGS
SAMAQVEAIFDASTKVEHLFKILLQEELSSHSEEILLLRDYRQFIRNCLDLLAAHEQLDSNLKQFNQVWDAYMEQHGEHA
SPLTPPHGLVSQLLQLDVSELLDAELDFEKGIRSEFPHYLERLSEQADLLLQHTQSQAMVGLYEYTNQLKDSYDVLLDRP
DLLQSDYVFEIYQKAHQQLIQLFDALAAGQRVSIIEQHQNILEELKLYTQYIPSLNSEPLESHQEVVESLFSADVEQTAN
ESSASIESVLTDHVVMSQSVHLDRQFMSTEHVNRYFDPELLDIFLEEADELLEGMDTDLNIWVNDQENFAALNNLMRYLH
TLKGGANMIQANYIGLIAHELESIYERLIQRQLITSSALIDFIRLVQDDLADRLQIVREQHLDYAASHTIQALKNAGKVY
NSLGSAAKEMQAESETDVIPESSVEVLQQEAIHNTALNLDELTSNFEQIVESNIGLVEHTELQAFDAEGYTDSIQDQDID
SVVEQTFMEEAAELLEMADHLLKQWFEQRTNRSILLQLQRAVHSLKGGSRMVGLETVQAIAYQLENAFEKFALYHFSSNI
YDNLLESAIVWLKEAIFKQNYQHFDGLQQSLENIQFIETAIQIPSKLTRTDLFSTEPVMSFVQGDGAEPPPMMGAWEQTR
HLEQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLVEMELAIQRLADQLRRMEGELESQIIAKHGIEHSRY
TEFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSEKIRDTESLLVQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVR
QTSTALDRPAELFVNNTEGELDRTMLERLVTPLEHMLRNAIDHGLEDRVQREQARKPETGRIELNIHRQGTDVVVTFKDD
GRGIDIEKVRQKALLSGLINPEQVLEHQDILQLIFHPGLSTADQVTQISGRGVGLDVVQSDIKALGGHVTVDSVYGQGTI
FTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPTSLEQYFGSAQEFFEFENKRYPLRYLSEFVGNQPIPRLSGM
MYSLPVLMIKTNNGQTIALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHKQLN
EAIYRQRESDERRLIMIVDDSVTVRKVTTRLLERQGYDVVTAKDGIDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRH
HDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDAFFTTREEELA

Nucleotide


Download         Length: 4497 bp        

>NTDB_id=634156 LRO55_RS03330 WP_231764639.1 677924..682420(+) (chpA) [Acinetobacter calcoaceticus strain ACa13]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGATGCTACCGGAAGATAGCTATTCTCAACAAGATGCTGAATTTCT
TGATATCTTCGTTGAAGAAATTGAAGAAATTTTTGTTGAATTGCAATCTTTGATTCATGAATGGATGCAATCTAAAAATG
TTGCTACGCTGACTGAGATCCGTCGCCATTTTCATACCTTGAAAGGTTCAGGGCGAATGATTGCAGCGAAATCCTCTGCT
GAGCTTGCTTGGACTGTAGAAGATACGCTTAATCGGGTAATCAATGAGAGTCTCACATTAACTCCTAACATCCAACAATA
TGTTCAGTTGGTATTTAAGTTCTATTTCTTTAAATTAGTAGATGACTTTAAATCTAAAAAGGAACATGCAGTAGATTTTA
GACCTCTTATTTTATTGGGACAACAATTACAACAACAGCAAAGTCTAGAGCCTGCTTTAGAAGAACTTTTATTATTGTCG
GATACTCTCACTGCGGAAACTAAGACTGGTTTAGAGGTGGATGATTTAGAACAGGAATCAGATAATTTAACTCTAGAAAC
CGCCATAGAAAGTGAACATAACCTTGCTGAAACCTTAGTTTTATTTATGGAAGAGGCGGAGGAACACTTAGCGACCATCG
ATCAATTCTTAGAACAAGAAATACATCAGCACGAGAGTTACAATGCATTAATCCGTGCATTACATACGTTGCGCGGCAGC
TCGGCAATGGCTCAGGTAGAAGCAATTTTTGATGCTAGTACTAAAGTTGAGCATTTATTTAAAATCCTATTACAAGAAGA
GCTTTCTTCTCATTCAGAAGAAATTTTACTACTCCGTGATTACCGTCAGTTTATTCGAAATTGTTTAGATCTATTGGCTG
CGCATGAGCAATTAGACTCTAACCTGAAACAGTTCAATCAGGTTTGGGATGCTTATATGGAGCAGCATGGGGAGCATGCG
AGCCCGCTCACGCCTCCACATGGTCTAGTATCTCAGCTTTTACAGCTAGATGTTTCAGAATTACTTGATGCAGAGTTAGA
TTTTGAAAAGGGAATTCGTTCTGAGTTTCCTCATTATCTTGAACGTTTAAGTGAACAAGCTGATTTGTTATTGCAACATA
CTCAGTCGCAGGCCATGGTTGGTTTATATGAATATACGAACCAGCTGAAAGATAGCTATGACGTATTGCTTGATCGACCT
GATTTATTGCAATCAGATTATGTTTTTGAAATTTATCAGAAAGCGCATCAACAATTAATTCAGTTATTTGATGCATTAGC
TGCAGGTCAAAGAGTTAGTATTATTGAGCAACACCAAAATATTTTGGAAGAGCTAAAACTATATACTCAATATATTCCAA
GCCTTAATTCTGAACCATTAGAAAGTCATCAGGAAGTTGTTGAGTCGCTATTTAGTGCTGATGTAGAACAAACAGCAAAT
GAATCTTCAGCATCTATCGAAAGTGTATTAACTGATCATGTAGTGATGAGTCAGAGTGTGCATTTAGATCGCCAGTTCAT
GTCTACTGAGCACGTAAACCGTTATTTTGATCCAGAACTGTTAGATATTTTTCTTGAAGAAGCCGATGAGTTGCTTGAAG
GAATGGATACAGATCTTAATATTTGGGTTAATGATCAAGAGAACTTTGCTGCTCTTAATAATCTGATGCGTTATTTGCAT
ACCTTAAAAGGTGGGGCAAATATGATTCAGGCAAATTATATTGGTTTAATTGCACATGAATTAGAAAGTATTTATGAGCG
CTTAATTCAAAGACAGTTAATTACTTCATCTGCTCTCATTGATTTTATCCGTCTGGTTCAAGATGATTTAGCTGATCGCC
TACAAATAGTACGTGAACAGCACCTAGATTATGCTGCTTCTCATACTATTCAAGCACTTAAGAATGCAGGTAAGGTATAT
AATTCCCTCGGGTCTGCTGCTAAAGAAATGCAAGCAGAGTCTGAAACTGATGTTATACCGGAATCAAGTGTTGAAGTATT
ACAACAAGAAGCTATACACAATACTGCGTTAAATCTCGATGAGTTAACTTCTAATTTTGAGCAGATTGTTGAGTCTAATA
TTGGACTTGTTGAACACACAGAATTACAAGCTTTTGATGCAGAAGGCTATACAGACAGTATCCAAGATCAGGATATTGAC
TCTGTTGTCGAGCAGACCTTTATGGAGGAAGCGGCCGAGCTGTTAGAGATGGCCGATCACCTATTAAAGCAGTGGTTTGA
GCAGCGTACCAATCGTAGTATCTTGCTTCAGCTACAAAGGGCAGTGCACAGCTTGAAAGGTGGTTCCCGTATGGTGGGAC
TTGAAACCGTACAAGCGATTGCCTATCAACTTGAAAATGCTTTTGAAAAATTTGCGCTTTATCATTTTAGCTCAAATATT
TATGACAACTTGCTAGAGAGTGCGATTGTTTGGTTAAAAGAGGCAATTTTCAAGCAAAATTATCAACATTTCGATGGTTT
ACAACAAAGTTTAGAAAATATTCAGTTTATTGAAACTGCAATACAAATTCCAAGTAAGTTGACCAGAACTGATCTATTTA
GCACTGAACCTGTAATGAGCTTTGTGCAAGGTGATGGGGCAGAACCACCGCCAATGATGGGGGCATGGGAACAAACGCGG
CATCTTGAACAAAATAATGAGATGATCAGGGTTTCGGCAGATTTAATTGAGAAAATGATTGATTTGTCTGGTGAAAATTC
GATTAACCGTTCACGAATTGAAATGGATCTCAGTCAATTTGGTCATACGTTAGTGGAAATGGAATTAGCCATTCAACGAC
TAGCAGACCAGTTACGTCGAATGGAAGGCGAATTAGAAAGTCAGATTATTGCAAAACACGGTATTGAGCACTCTCGTTAT
ACAGAATTTGATCCTCTGGAGATGGACCAATATTCTTCATTGAATCAATTGTCGAAATCACTTGCCGAATCTGCATCGGA
TTTAGTGGATTTCAAAAATACATTATCCGAAAAAATCAGAGACACCGAAAGTTTGCTGGTACAACAGTCACGTATTCAGG
CCGAAATTCAAGAAGGCCTAATGCGAACACGATTAGTACCATTCTCTCGATTGCTACCTCGTTTACAAAGAATTGTGAGG
CAGACTTCTACTGCATTGGATCGACCAGCAGAGCTTTTTGTTAATAATACCGAAGGTGAATTAGACCGGACAATGCTAGA
ACGTTTGGTTACTCCACTTGAGCACATGCTTCGAAATGCAATTGATCATGGTCTAGAAGATCGTGTGCAGCGTGAACAAG
CGCGAAAACCAGAAACTGGACGTATTGAACTGAATATTCATCGTCAAGGTACGGATGTTGTTGTTACATTTAAGGATGAT
GGCCGAGGTATTGATATCGAGAAGGTCCGTCAAAAGGCCCTATTGTCTGGTTTGATTAATCCTGAACAAGTATTAGAACA
TCAAGATATTTTACAGTTGATTTTCCATCCAGGGTTAAGTACGGCCGATCAAGTCACTCAGATTTCAGGTCGTGGTGTAG
GACTAGATGTTGTACAAAGTGATATTAAAGCTTTGGGCGGACATGTGACTGTGGACTCTGTGTATGGGCAAGGAACAATC
TTTACAATACGCGTTCCGACCACAGTAGCTGTTAGTGATGCCTTAATGGTTAAAGTTGCTGATCAACAATTTGCAATTCC
GTTAGCTCAAATTGATCGAATTGTTCGAGTTTCACCAACATCATTAGAACAGTATTTTGGAAGTGCACAAGAATTCTTTG
AATTTGAAAATAAACGCTATCCATTACGTTATTTATCTGAGTTTGTTGGTAATCAACCAATTCCACGTTTAAGCGGGATG
ATGTATTCATTACCAGTATTAATGATTAAGACCAATAATGGACAAACAATTGCATTATTGGTTGATCAGCTTATTGGTTC
ACGTGCGCAGATTGTAGTCAAGCCAATCGGGCAGCAGTTCTCTAGTATTGGTGCGATTGCAGGCGCAACTATTTTAGGTG
ATGGTCAAGTTTGTCTAATTTTAGATGGACAAAATATTGCTCGCCAAATTCAGTCTACCCGCCGACATAAGCAGCTGAAT
GAAGCTATCTATAGACAACGTGAGTCTGATGAACGCCGTCTCATTATGATTGTAGATGACTCTGTCACAGTCCGTAAGGT
AACGACTCGTTTACTCGAACGTCAGGGCTATGATGTAGTAACTGCTAAAGATGGTATCGATGCAATTGAGCAGTTGGAAA
ATATTAAACCAGATCTGATGCTGCTTGATATCGAAATGCCGCGAATGGATGGCTTTGAAGTACTTAACCTCGTGCGACAT
CATGATCTACATCAAGATATGCCAGTCATTATGATTACATCTAGAACTGGCGAAAAACACCGTGAACGAGCATTTACTTT
AGGGGTTAACCAATACATGGGTAAACCTTTCCAAGAAGAAGACTTACTTCACAATATTGATGCTTTTTTCACGACACGTG
AAGAGGAACTTGCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

79.472

100

0.804