Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LRO55_RS02030 Genome accession   NZ_CP088954
Coordinates   426409..427038 (-) Length   209 a.a.
NCBI ID   WP_231765276.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421409..432038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS01995 (LRO55_01995) mlaE 421736..422515 (+) 780 WP_017388296.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LRO55_RS02000 (LRO55_02000) - 422515..423198 (+) 684 WP_005038457.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LRO55_RS02005 (LRO55_02005) - 423225..423866 (+) 642 WP_005038459.1 phospholipid-binding protein MlaC -
  LRO55_RS02010 (LRO55_02010) - 423878..424165 (+) 288 WP_017390219.1 lipid asymmetry maintenance protein MlaB -
  LRO55_RS02015 (LRO55_02015) - 424238..425251 (-) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  LRO55_RS02020 (LRO55_02020) - 425410..425991 (+) 582 WP_005038465.1 TIGR00730 family Rossman fold protein -
  LRO55_RS02025 (LRO55_02025) - 426005..426403 (+) 399 WP_005038468.1 NUDIX hydrolase -
  LRO55_RS02030 (LRO55_02030) comF 426409..427038 (-) 630 WP_231765276.1 ComF family protein Machinery gene
  LRO55_RS02035 (LRO55_02035) recG 427031..429076 (-) 2046 WP_231764536.1 ATP-dependent DNA helicase RecG -
  LRO55_RS02040 (LRO55_02040) - 429097..429912 (+) 816 WP_231764537.1 SDR family NAD(P)-dependent oxidoreductase -
  LRO55_RS02045 (LRO55_02045) - 429992..430975 (+) 984 WP_231764538.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24170.24 Da        Isoelectric Point: 9.0413

>NTDB_id=634152 LRO55_RS02030 WP_231765276.1 426409..427038(-) (comF) [Acinetobacter calcoaceticus strain ACa13]
MFSFLNPQHLIHSLSPCLLCESGVREKHSLCKDCWEQLPWLKQIIQRNDQSVLVACDYEYPVNRIIQQFKYEQKLHYQIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAL
SQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=634152 LRO55_RS02030 WP_231765276.1 426409..427038(-) (comF) [Acinetobacter calcoaceticus strain ACa13]
ATGTTTAGTTTCTTAAATCCGCAGCATCTTATCCACTCACTCTCACCTTGCTTGTTGTGTGAGTCAGGTGTGCGAGAAAA
ACATTCGCTCTGTAAGGACTGTTGGGAACAGTTACCTTGGCTTAAACAAATAATTCAACGTAATGATCAATCTGTTCTTG
TGGCCTGTGATTATGAATATCCAGTCAATCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGTGAAATTTTACAACAACTCAAATTTCCTAAGGTACAAGCTATTGTACCTATGCCGATTTCGAATCAACGCTTAAT
TGAACGTGGTTTTAATCAGTCACTATTACTCGCAAATATCTTAAGCAAGCAATTAAAAATACCTGTTTGGCAACCAGTGC
AACGCCTTGCAGAGCATTCACAAAAAGGGCTTTCTCGACTGGAACGCTTTGAGAACATTGAGCAACAATTTATTGCGCTT
TCTCAAGAAAAACGGCGTTATCGCCGTGTTCTTATTATTGATGACGTAATAACCACGGGAAGCTCTATTCATGCGCTCAG
TCAAGCACTTAAACAATTAGGCTGCACATCTATCCATGCCGCTTGTTTAGCGGCAACTTTGACCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

87.081

100

0.871
  comF Acinetobacter baumannii D1279779

86.124

100

0.861