Detailed information NTG0634128

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRR79_RS06410
• Genome accession: NZ_CP088953
• Coordinates: 1566819..1568228 (-)
• Length: 469 a.a.
• NCBI ID: WP_231759550.1
• Uniprot ID: -
• Organism: Microbulbifer elongatus strain DSM 6810
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1561819..1573228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRR79_RS06390	-	1562388..1565660 (+)	3273	WP_231759548.1	pilus assembly protein	-
LRR79_RS06400	-	1565699..1566145 (+)	447	WP_269455105.1	type IV pilin protein	-
LRR79_RS06405	-	1566146..1566718 (-)	573	WP_231759549.1	GspH/FimT family pseudopilin	-
LRR79_RS06410	pilR	1566819..1568228 (-)	1410	WP_231759550.1	sigma-54 dependent transcriptional regulator	Regulator
LRR79_RS06415	-	1568268..1569848 (-)	1581	WP_231759551.1	PAS domain-containing sensor histidine kinase	-
LRR79_RS06420	-	1570035..1571663 (+)	1629	WP_231759552.1	NAD+ synthase	-
LRR79_RS06425	-	1571791..1572738 (-)	948	WP_231759553.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 469 a.a.
• Molecular weight: 52328.51 Da
• Isoelectric Point: 4.8090

>NTDB_id=634128 LRR79_RS06410 WP_231759550.1 1566819..1568228(-) (pilR) [Microbulbifer elongatus strain DSM 6810]
MTDRQPIALVVDDEPDICELISMTLQRMNIRTDIAMSVAEARRRLQEKQYDFCLTDMRLPDGDGLDLVEAIQDRPFDQAF
PVAVITAHGNMDTAIAALKLGAFDFVSKPVNLERLRSLVQLALRLGEDRILQKQEFPPLLQGQSTTIQALREALSRAARS
DAPVHLRGEHGAGKELAARCIHELGPRAEGPFVPVHCSSIPAEFFEQLLFGDESAGRDVQGLLQSANGGTLFLDEVTALP
KEIQVKLLQVIEDKRFQPVGGAASQPLNIRLISSSRKSLANETRRGEFRSDLYFRINVVEMIMPSLRDRKEDIPLLARFL
LRRLTEHAPGNPPRAGQDAIAALQEYSFPGNLRQLENILEKALARCESNTVHATDLDLTSEPPVPEPEETTEHFELSAST
TSGVIQPIYPGQFETADCETLDDFLQTIERDAIEAALNETRWNKTAAAEKLGISFRSLRYRLKKLNMED

Nucleotide

• Length: 1410 bp

>NTDB_id=634128 LRR79_RS06410 WP_231759550.1 1566819..1568228(-) (pilR) [Microbulbifer elongatus strain DSM 6810]
ATGACCGACCGTCAACCTATCGCACTGGTTGTGGATGACGAACCAGATATCTGTGAATTGATCTCCATGACGCTGCAGCG
CATGAACATCCGTACGGATATCGCCATGTCAGTAGCCGAAGCCCGCCGCCGCCTGCAGGAGAAGCAGTACGACTTCTGCC
TGACCGATATGCGCCTCCCCGATGGCGATGGTCTGGATCTGGTAGAAGCCATCCAGGACCGTCCATTCGACCAGGCATTC
CCAGTGGCAGTCATAACCGCACACGGCAATATGGACACCGCGATTGCGGCACTGAAGCTCGGCGCTTTCGACTTTGTAAG
CAAGCCGGTCAACCTTGAACGCCTGCGGTCTCTGGTGCAGCTGGCCTTGCGACTGGGGGAAGACCGCATCCTGCAAAAAC
AGGAATTTCCACCACTACTACAGGGGCAATCCACCACAATCCAGGCCCTGCGCGAAGCCCTCAGCAGAGCAGCACGCAGT
GATGCCCCGGTGCACCTGCGCGGCGAACACGGCGCAGGTAAAGAGTTGGCGGCGCGCTGTATCCACGAACTGGGACCCCG
TGCGGAAGGCCCTTTCGTCCCGGTTCACTGCTCCAGTATCCCTGCGGAATTTTTTGAACAGCTGCTATTTGGTGACGAGT
CCGCCGGCAGAGACGTGCAGGGGCTACTGCAATCCGCCAATGGAGGCACCCTGTTTCTCGACGAAGTTACCGCACTTCCC
AAAGAGATCCAGGTGAAGCTCCTCCAGGTCATTGAAGATAAGCGTTTCCAGCCCGTTGGCGGGGCGGCATCTCAGCCACT
CAACATTCGGCTGATCAGCAGTAGCCGCAAAAGCCTCGCCAACGAAACGCGGCGCGGTGAATTTCGCAGTGACCTGTATT
TTCGGATCAACGTTGTAGAAATGATCATGCCCTCTCTCCGGGACCGCAAGGAAGACATTCCACTACTGGCCCGCTTTCTG
CTGCGTCGGCTTACCGAGCATGCACCGGGCAATCCACCCAGAGCGGGACAGGACGCCATAGCCGCATTACAGGAGTACTC
CTTCCCCGGCAACCTGCGGCAGCTGGAGAACATCCTGGAAAAAGCGCTGGCGCGCTGCGAATCCAATACCGTCCACGCCA
CAGATCTGGACCTGACCAGTGAACCGCCGGTGCCGGAACCCGAAGAAACCACAGAACACTTCGAACTGTCCGCTTCGACG
ACCTCAGGGGTGATACAGCCGATCTATCCCGGCCAGTTTGAGACTGCCGACTGCGAAACACTGGATGACTTCCTTCAGAC
CATTGAGCGCGATGCCATCGAAGCAGCACTAAACGAAACCCGCTGGAACAAAACCGCCGCGGCGGAGAAGCTGGGCATCA
GCTTTCGGTCGCTGAGATATCGGCTAAAAAAATTAAATATGGAAGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (425-465)

• Sigma-54 interaction domain (Sigma54_activat) (141-301)

• Response regulator receiver domain (Response_reg) (9-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.291	99.787	0.482
pilR	Acinetobacter baumannii strain A118	43.187	100	0.439