Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LSQ66_RS17995 Genome accession   NZ_CP088952
Coordinates   3927297..3928787 (-) Length   496 a.a.
NCBI ID   WP_231766561.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3922297..3933787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS17985 (LSQ66_17985) - 3922840..3923949 (-) 1110 WP_231766559.1 ribonucleotide-diphosphate reductase subunit beta -
  LSQ66_RS17990 (LSQ66_17990) - 3924005..3926944 (-) 2940 WP_231766560.1 ribonucleoside-diphosphate reductase subunit alpha -
  LSQ66_RS17995 (LSQ66_17995) pilR 3927297..3928787 (-) 1491 WP_231766561.1 sigma-54 dependent transcriptional regulator Regulator
  LSQ66_RS18000 (LSQ66_18000) - 3928808..3930490 (-) 1683 WP_231766562.1 PAS domain-containing sensor histidine kinase -
  LSQ66_RS18005 (LSQ66_18005) - 3930494..3930742 (-) 249 WP_231766563.1 PP0621 family protein -
  LSQ66_RS18010 (LSQ66_18010) - 3930739..3931542 (-) 804 WP_231766564.1 inner membrane protein YpjD -
  LSQ66_RS18015 (LSQ66_18015) - 3931583..3932380 (-) 798 WP_231766565.1 ABC transporter ATP-binding protein -
  LSQ66_RS18020 (LSQ66_18020) - 3932381..3933205 (-) 825 WP_231766566.1 ABC transporter permease -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52706.15 Da        Isoelectric Point: 4.7752

>NTDB_id=634109 LSQ66_RS17995 WP_231766561.1 3927297..3928787(-) (pilR) [Massilia endophytica strain DM-R-R2A-13]
MSSPRVLVVDDEADLRELLEITLLKMGLDVDSAATLQEARGLFAAGDYQLVLTDMRLPDGLGLELVREVSASGRNTPIAV
VTAFGSADNAVVALKAGAFDYVSKPVQLDQLRVMVQSALKLDSASAPAVPRGEPVDSRLKGDSAAMQALRAQIARLARSM
APIAITGESGSGKEVAAREIHAQSSRADQPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAANGGTLMLDEV
ADLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIISATHQDLARCVEQGRFRQDLFYRLNVIELSLPPLRERLDDLPVL
TDAILARLARGGEKPKLGPGVLEALAGYSFPGNVRELENVLERALAYSNDGVIDAADLSLKGAAVAAHAPDAPAASAPSS
AAAPAEAYAAPAFAAGDSAAPPAAGPSASTRMPPLPDLSVLPDNLPAYLEMVEREIIQRALVQTQYNRTQAAQLLGISFR
QLRYQMQKLNIQAPNS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=634109 LSQ66_RS17995 WP_231766561.1 3927297..3928787(-) (pilR) [Massilia endophytica strain DM-R-R2A-13]
ATGAGTTCTCCCCGCGTTCTTGTCGTCGACGATGAAGCAGACCTGCGTGAGCTGCTGGAGATCACCCTGCTCAAGATGGG
CCTGGACGTGGACAGCGCCGCCACCCTGCAGGAGGCGCGCGGCCTGTTCGCGGCGGGGGATTACCAGCTGGTGCTGACGG
ATATGCGCCTGCCGGACGGCCTGGGCCTGGAGCTGGTGCGCGAGGTGTCGGCCAGCGGCCGCAACACGCCCATCGCCGTG
GTGACGGCCTTCGGCAGCGCGGACAACGCCGTGGTCGCGCTGAAGGCCGGGGCCTTCGACTATGTAAGCAAGCCCGTGCA
GCTGGACCAGCTGCGCGTGATGGTGCAGTCCGCCCTCAAGCTGGATTCGGCCTCGGCTCCCGCCGTCCCGCGCGGAGAGC
CGGTGGACAGCCGCCTGAAAGGCGACTCCGCCGCCATGCAGGCCCTGCGCGCCCAGATCGCCCGCCTGGCCCGCTCCATG
GCGCCCATCGCCATCACCGGCGAATCGGGCAGCGGCAAGGAAGTGGCGGCGCGCGAGATCCATGCCCAGAGTTCGCGTGC
GGACCAGCCCTTCGTGGCCGTGAACTGCGGCGCCATTCCCGAGGCCCTGATGGAGGCCGAATTCTTCGGCTACCGCAAGG
GCGCCTTCACGGGCGCCGCCGACGAGCGGGACGGCTTCTTCCAGGCCGCGAACGGCGGCACCCTCATGCTGGACGAGGTG
GCCGACCTGCCGCTGGCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCAACGGC
CGAGGAACCGGTGGACGTGCGCATCATCAGCGCCACCCACCAGGACCTGGCGCGCTGCGTGGAGCAGGGCAGGTTCCGGC
AGGACCTGTTCTACCGCCTGAACGTGATCGAGCTCTCGCTGCCGCCCCTGCGCGAGCGCCTGGACGACCTGCCGGTGCTG
ACCGACGCCATCCTGGCCCGCCTGGCGCGCGGCGGGGAAAAGCCGAAGCTCGGTCCCGGCGTGCTGGAAGCGCTGGCGGG
CTACAGCTTCCCCGGCAATGTGCGGGAGCTGGAGAATGTGCTGGAGCGGGCGCTCGCCTATTCGAACGACGGCGTGATCG
ATGCCGCCGACCTGTCGCTGAAGGGCGCCGCCGTCGCCGCGCACGCCCCCGACGCCCCGGCCGCCTCGGCGCCATCGTCC
GCCGCCGCGCCAGCGGAGGCATACGCGGCTCCCGCATTCGCCGCCGGCGACAGCGCAGCGCCGCCCGCCGCCGGGCCTTC
GGCATCCACCCGCATGCCCCCGCTGCCCGACCTCTCCGTCCTGCCGGACAACCTGCCGGCCTACCTGGAAATGGTCGAGC
GCGAGATCATCCAGCGCGCCCTGGTGCAGACCCAGTACAACCGCACCCAGGCCGCCCAGCTGCTGGGCATCAGCTTCCGC
CAGCTGCGCTACCAGATGCAGAAACTGAACATCCAGGCCCCCAATTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)

Bacterial regulatory protein, Fis family (HTH_8)

(449-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.333

99.395

0.52
  pilR Acinetobacter baumannii strain A118

43.992

98.992

0.435