Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   T256_RS04200 Genome accession   NC_022780
Coordinates   853994..855256 (+) Length   420 a.a.
NCBI ID   WP_023440311.1    Uniprot ID   -
Organism   Pediococcus pentosaceus SL4     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 848994..860256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T256_RS04175 (T256_04285) tsf 849850..850728 (+) 879 WP_002833606.1 translation elongation factor Ts -
  T256_RS04180 (T256_04290) pyrH 850882..851607 (+) 726 WP_023440309.1 UMP kinase -
  T256_RS04185 (T256_04295) frr 851607..852167 (+) 561 WP_002833608.1 ribosome recycling factor -
  T256_RS04190 (T256_04300) - 852425..853174 (+) 750 WP_011673316.1 isoprenyl transferase -
  T256_RS04195 (T256_04305) - 853185..853970 (+) 786 WP_041525506.1 phosphatidate cytidylyltransferase -
  T256_RS04200 (T256_04310) eeP 853994..855256 (+) 1263 WP_023440311.1 RIP metalloprotease RseP Regulator
  T256_RS04205 (T256_04315) - 855284..856999 (+) 1716 WP_023440312.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46324.89 Da        Isoelectric Point: 9.6829

>NTDB_id=63408 T256_RS04200 WP_023440311.1 853994..855256(+) (eeP) [Pediococcus pentosaceus SL4]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGSFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQTKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=63408 T256_RS04200 WP_023440311.1 853994..855256(+) (eeP) [Pediococcus pentosaceus SL4]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCTGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGATCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAACAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGTTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCCACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTTGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

47.642

100

0.481
  eeP Streptococcus thermophilus LMG 18311

47.642

100

0.481

Multiple sequence alignment