Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LQF09_RS05065 Genome accession   NZ_CP088935
Coordinates   1094741..1096162 (+) Length   473 a.a.
NCBI ID   WP_002926913.1    Uniprot ID   -
Organism   Thauera sp. WB-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089741..1101162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF09_RS05040 (LQF09_05040) - 1089745..1090434 (-) 690 WP_270069349.1 class II aldolase/adducin family protein -
  LQF09_RS05045 (LQF09_05045) mtnA 1090431..1091522 (-) 1092 WP_002936295.1 S-methyl-5-thioribose-1-phosphate isomerase -
  LQF09_RS05050 (LQF09_05050) - 1091635..1092792 (-) 1158 WP_270069350.1 pyridoxal phosphate-dependent aminotransferase -
  LQF09_RS05055 (LQF09_05055) - 1092926..1093174 (+) 249 WP_002926918.1 PP0621 family protein -
  LQF09_RS05060 (LQF09_05060) - 1093140..1094744 (+) 1605 WP_270069351.1 ATP-binding protein -
  LQF09_RS05065 (LQF09_05065) pilR 1094741..1096162 (+) 1422 WP_002926913.1 sigma-54 dependent transcriptional regulator Regulator
  LQF09_RS05070 (LQF09_05070) - 1096255..1097664 (+) 1410 WP_270069352.1 MBL fold metallo-hydrolase -
  LQF09_RS05075 (LQF09_05075) - 1097667..1098440 (-) 774 WP_002936288.1 outer membrane lipoprotein-sorting protein -
  LQF09_RS05080 (LQF09_05080) - 1098485..1099234 (+) 750 WP_002926907.1 ABC transporter ATP-binding protein -
  LQF09_RS05085 (LQF09_05085) - 1099303..1100625 (+) 1323 WP_270069353.1 DUF1302 family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 51509.87 Da        Isoelectric Point: 6.2470

>NTDB_id=634072 LQF09_RS05065 WP_002926913.1 1094741..1096162(+) (pilR) [Thauera sp. WB-2]
MNAVERRQRPQSVDVLIVDDEEDIRELLELSLMRLGLACDAVGTVADAIARLEARRYRLCLTDMRLPDGDGLGLVEHIQA
HCPGLPVAVITAFGSIETAIRALKLGAFDFVTKPVELKALRELVTHALRLGATGDKAAGTTPERALIGHSPAFMQLRAQA
EKLARNQAPVFIHGESGTGKEVIARFIHSLGTRTAGPFVPVNCGAISPELMESEFFGHRKGSFTGAASDKQGLFQAASGG
TLFLDEIGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRLLSASHQDLGRLVAEGRFRQDLFFRINVITLRMPPLRER
REDIPALAEHILARLAAREGGAPRRLSAAALHALQGYAFPGNVRELENLLERACAMCEGDEIDAADIELYPDQTASGWLT
DSAAGPFGFQVPGDFGDHGGGGEPGQEPAADDAERLRIIRALEQTRWNRSAAARNLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=634072 LQF09_RS05065 WP_002926913.1 1094741..1096162(+) (pilR) [Thauera sp. WB-2]
ATGAATGCCGTCGAACGCCGTCAACGCCCCCAGTCAGTCGACGTGCTCATCGTCGACGATGAGGAAGACATCCGCGAACT
GCTCGAACTGTCGCTGATGCGTCTTGGCCTGGCTTGCGACGCAGTGGGCACCGTCGCCGATGCGATCGCCCGACTGGAGG
CTCGCCGTTATCGCCTGTGCCTGACCGACATGCGGCTACCCGATGGCGATGGGCTTGGCCTGGTGGAGCACATCCAGGCA
CACTGCCCGGGCTTGCCGGTGGCGGTGATCACCGCATTCGGCAGTATCGAGACCGCGATCAGGGCACTCAAGCTCGGTGC
CTTCGACTTCGTCACCAAGCCGGTCGAGCTCAAGGCCCTGCGCGAGCTCGTCACCCATGCCCTCAGGCTGGGCGCGACCG
GGGATAAGGCTGCGGGAACCACGCCCGAACGTGCCCTGATCGGGCATTCGCCCGCCTTCATGCAGTTGCGCGCCCAGGCC
GAGAAGCTTGCGCGCAACCAGGCGCCGGTGTTCATCCATGGTGAGTCGGGGACCGGCAAGGAGGTCATCGCCCGCTTCAT
CCACAGCCTGGGGACGCGTACCGCCGGGCCCTTTGTGCCGGTGAACTGCGGAGCGATCTCGCCCGAGCTGATGGAAAGCG
AGTTTTTCGGTCATCGCAAGGGCAGCTTCACCGGCGCGGCCAGCGACAAGCAGGGCCTGTTCCAGGCTGCGAGCGGCGGC
ACGCTGTTTCTGGACGAGATCGGTGAGTTGCCGCTGGCCATGCAGGTCAAGCTGTTGCGCGCCATCCAGGAGCGCGCGGT
ACGGCCGGTCGGCGCCCATGCCGAGGAGCCGGTCGATGTGCGCCTGTTGTCAGCGTCGCATCAGGATCTCGGGCGACTGG
TCGCGGAAGGGCGCTTCCGCCAGGACCTCTTCTTCCGCATCAACGTCATCACCTTGCGCATGCCGCCGCTGCGCGAGCGC
CGTGAGGACATTCCCGCGCTTGCCGAGCACATCCTCGCTCGCCTGGCTGCGCGTGAGGGCGGGGCGCCGCGCCGACTGTC
GGCCGCCGCGCTGCATGCGCTGCAGGGCTATGCCTTCCCGGGCAATGTGCGCGAGCTCGAGAACCTGCTCGAGCGTGCCT
GCGCGATGTGCGAGGGCGACGAGATCGACGCCGCCGACATCGAGCTCTACCCGGACCAGACGGCGTCTGGCTGGCTTACC
GACAGTGCCGCGGGGCCTTTTGGCTTTCAGGTGCCAGGCGATTTCGGCGACCATGGCGGCGGCGGAGAGCCCGGGCAGGA
ACCCGCTGCCGACGACGCCGAGCGTCTGCGCATCATCCGCGCGCTCGAGCAGACGCGCTGGAATCGCAGTGCGGCGGCGC
GCAACCTCGGCATGACCTTGCGCCAGCTGCGCTATCGGCTGCAGAAGTGGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(431-470)

Response regulator receiver domain (Response_reg)

(15-124)

Sigma-54 interaction domain (Sigma54_activat)

(146-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.424

96.829

0.556
  pilR Acinetobacter baumannii strain A118

48.696

97.252

0.474