Detailed information NTG0634035

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRK55_RS04800
• Genome accession: NZ_CP088925
• Coordinates: 1027913..1029301 (+)
• Length: 462 a.a.
• NCBI ID: WP_015446878.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW104-MT042
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1022913..1034301

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK55_RS04790 (LRK55_04790)	-	1024212..1025480 (+)	1269	WP_027485333.1	MFS transporter	-
LRK55_RS04795 (LRK55_04795)	-	1025500..1027743 (+)	2244	WP_235644871.1	glycosyl hydrolase family 65 protein	-
LRK55_RS04800 (LRK55_04800)	pilR	1027913..1029301 (+)	1389	WP_015446878.1	sigma-54 dependent transcriptional regulator	Regulator
LRK55_RS04805 (LRK55_04805)	-	1029464..1030729 (-)	1266	WP_015446877.1	FtsX-like permease family protein	-
LRK55_RS04810 (LRK55_04810)	-	1030726..1032057 (-)	1332	WP_015446876.1	FtsX-like permease family protein	-
LRK55_RS04815 (LRK55_04815)	-	1032093..1033628 (-)	1536	WP_007507365.1	response regulator	-
LRK55_RS04820 (LRK55_04820)	-	1033726..1034172 (-)	447	WP_007507367.1	response regulator	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49981.13 Da
• Isoelectric Point: 5.9821

>NTDB_id=634035 LRK55_RS04800 WP_015446878.1 1027913..1029301(+) (pilR) [Rhodanobacter denitrificans strain FW104-MT042]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEVIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRRGSFTGASTDKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGDSVGQLSPSAREALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAAAGQ
PPTPVAAAAGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=634035 LRK55_RS04800 WP_015446878.1 1027913..1029301(+) (pilR) [Rhodanobacter denitrificans strain FW104-MT042]
ATGAACCCCCAGACCGTTTTGGTCATCGATGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCGCGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGGTCATCGAGCTGATCGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTGCGCACCGCGCTGCGCCTCGCCGAGGAACGGCGCACCGGCGCCGCCGCGGCGAAGA
CCGGCGACTCCAGCGACCGCCTGATCGGCGACTCCACCGCCATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCGCGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAGCAGGGTCC
GCGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACC
GCAGGGGCAGCTTCACCGGCGCCAGCACCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAAGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATTCTTTCCGCCACCCACAAGAACCTCGGCCAGCTGGTCGAACAGGGCCAGT
TCCGCCAGGACCTGTTCTATCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGCCG
CAATTGTCCGCATTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGACAGCGTGGGCCAGTTGTCGCCGTCCGCGCGCGA
GGCGCTGGAGGCGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGATCAGCCACGAGCCGGCCGCAGCGGGACAG
CCGCCGACACCCGTCGCGGCCGCCGCCGGCGCGGACGGCGGCCTCGACGACTACATCAGCAACCTGGAGCGCACCGCCAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.606	100	0.606
pilR	Acinetobacter baumannii strain A118	47.403	100	0.474