Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LRK53_RS05730 Genome accession   NZ_CP088923
Coordinates   1328836..1329234 (+) Length   132 a.a.
NCBI ID   WP_007507049.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain FW510-R12     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323836..1334234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK53_RS05705 (LRK53_05705) - 1324593..1325519 (-) 927 WP_027493067.1 aspartate carbamoyltransferase catalytic subunit -
  LRK53_RS05710 (LRK53_05710) ruvX 1325552..1326001 (-) 450 WP_027493066.1 Holliday junction resolvase RuvX -
  LRK53_RS05715 (LRK53_05715) - 1325998..1326567 (-) 570 WP_008435790.1 YqgE/AlgH family protein -
  LRK53_RS05720 (LRK53_05720) - 1326620..1327489 (-) 870 WP_027493065.1 energy transducer TonB -
  LRK53_RS05725 (LRK53_05725) gshB 1327486..1328463 (-) 978 WP_027493064.1 glutathione synthase -
  LRK53_RS05730 (LRK53_05730) pilG 1328836..1329234 (+) 399 WP_007507049.1 twitching motility response regulator PilG Regulator
  LRK53_RS05735 (LRK53_05735) - 1329257..1329628 (+) 372 WP_027493063.1 response regulator -
  LRK53_RS05740 (LRK53_05740) - 1329625..1330164 (+) 540 WP_027493062.1 chemotaxis protein CheW -
  LRK53_RS05745 (LRK53_05745) - 1330295..1332325 (+) 2031 WP_027493061.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14619.98 Da        Isoelectric Point: 7.8835

>NTDB_id=634013 LRK53_RS05730 WP_007507049.1 1328836..1329234(+) (pilG) [Rhodanobacter thiooxydans strain FW510-R12]
MSANELDGLKVMVIDDSKTIRRTAETLLKKEGCEVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKNNPQF
RATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTVSSH

Nucleotide


Download         Length: 399 bp        

>NTDB_id=634013 LRK53_RS05730 WP_007507049.1 1328836..1329234(+) (pilG) [Rhodanobacter thiooxydans strain FW510-R12]
ATGAGCGCTAACGAGTTGGACGGTCTGAAAGTCATGGTGATCGATGACTCCAAGACCATCCGCCGCACGGCGGAAACCCT
GCTGAAAAAAGAGGGCTGCGAGGTGCTGACCGCGGTCGACGGTTTCGAGGCGCTCGCCAAGATTTCCGACCAGAAGCCCG
CCATCATCTTCGTCGACATCATGATGCCGCGGCTGGACGGCTACCAGACCTGCGCACTGATCAAGAACAACCCGCAGTTT
CGCGCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCGCGCGGCCGCATCGTCGGCGCCGAGCA
ATACCTGACCAAGCCGTTCACCCGGGACGAGTTGCTTGGTGCCATCCATCGCCACGTCAGCACGGTATCGAGCCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

91.667

0.689
  vicR Streptococcus mutans UA159

41.026

88.636

0.364