Detailed information NTG0634009

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRK53_RS04990
• Genome accession: NZ_CP088923
• Coordinates: 1170923..1172311 (-)
• Length: 462 a.a.
• NCBI ID: WP_027493317.1
• Uniprot ID: -
• Organism: Rhodanobacter thiooxydans strain FW510-R12
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1165923..1177311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK53_RS04970 (LRK53_04970)	-	1166022..1166468 (+)	447	WP_027493314.1	response regulator	-
LRK53_RS04975 (LRK53_04975)	-	1166544..1168106 (+)	1563	WP_235642649.1	response regulator	-
LRK53_RS04980 (LRK53_04980)	-	1168141..1169466 (+)	1326	WP_027493315.1	FtsX-like permease family protein	-
LRK53_RS04985 (LRK53_04985)	-	1169463..1170707 (+)	1245	WP_027493316.1	FtsX-like permease family protein	-
LRK53_RS04990 (LRK53_04990)	pilR	1170923..1172311 (-)	1389	WP_027493317.1	sigma-54 dependent transcriptional regulator	Regulator
LRK53_RS04995 (LRK53_04995)	-	1172497..1174755 (-)	2259	WP_235642539.1	glycoside hydrolase family 65 protein	-
LRK53_RS05000 (LRK53_05000)	-	1174774..1176042 (-)	1269	WP_027493318.1	MFS transporter	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49814.91 Da
• Isoelectric Point: 6.4111

>NTDB_id=634009 LRK53_RS04990 WP_027493317.1 1170923..1172311(-) (pilR) [Rhodanobacter thiooxydans strain FW510-R12]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGTGHEIIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRSGAAAAKTGDSSRLIGDSSAMQQVRATIAKLARN
QAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASTDKEGLFQAAQGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDARILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVSQ
LSAFILKALAGKSGESVGQLSPSARGALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARPSHEPAAPGQP
SAPAAAASTGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=634009 LRK53_RS04990 WP_027493317.1 1170923..1172311(-) (pilR) [Rhodanobacter thiooxydans strain FW510-R12]
ATGAATCCCCAGACCGTTTTGGTCATCGACGATGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGACGGATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCACGCCGCGCACTGGCCGAACGCAGTTACGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCACCGGCCACGAAATCATCGAACTGATTGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCAGTGAACGCGCTGAAGGCCGGCGCATTCGATTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTGCGCACCGCGCTGCGTCTGGCCGAGGAACGGCGCAGCGGCGCCGCCGCCGCGAAGA
CCGGCGACTCCAGCCGCCTGATCGGCGACTCCAGCGCCATGCAGCAGGTGCGCGCCACCATCGCCAAGCTGGCGCGCAAC
CAGGCGCCGGTGTACATCGCCGGCGAATCCGGTGTAGGCAAGGAGCTGGTGGCGCGACTGATCCACGAGCAGGGCCCGCG
CGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCCAGCACCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTTCTCGACGAG
GTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAGGCGGTGCGCCCGATCGGCGGCCG
CGACGAGATCCCGGTCGACGCGCGCATCCTGTCGGCCACCCACAAGAACCTCGGCCAGCTGGTCGAGCAGGGCCAGTTCC
GCCAGGACCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGTCGCAG
CTGTCCGCGTTCATCCTCAAAGCACTGGCCGGCAAGAGTGGGGAAAGCGTCGGCCAGCTGTCGCCGTCCGCCCGCGGCGC
GCTGGAAGCCTACGACTTCCCCGGAAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACGGCA
GCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGCCCAGCCACGAACCGGCGGCACCGGGACAGCCG
TCGGCACCCGCCGCGGCCGCCAGCACCGGCGCGGACGGCGGCCTCGACGACTACATCAGCAACCTCGAGCGCACCGCCAT
CGTCAAGGCGCTGGAGGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTAGGCATCGACTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (6-114)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.606	100	0.606
pilR	Acinetobacter baumannii strain A118	46.97	100	0.47