Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA4_RS12435 Genome accession   NZ_CP104866
Coordinates   2644920..2645564 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain PALA4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2639920..2650564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS12420 (PALA4_02466) - 2640554..2641768 (+) 1215 WP_003108786.1 MFS transporter -
  PALA4_RS12425 (PALA4_02467) - 2641784..2642812 (-) 1029 WP_003108788.1 AraC family transcriptional regulator -
  PALA4_RS12430 (PALA4_02468) pqsH 2643430..2644578 (+) 1149 WP_003108790.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PALA4_RS12435 (PALA4_02469) letA 2644920..2645564 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PALA4_RS12440 (PALA4_02470) uvrC 2645565..2647391 (+) 1827 WP_003090350.1 excinuclease ABC subunit UvrC -
  PALA4_RS12445 (PALA4_02471) pgsA 2647425..2647985 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PALA4_RS12455 (PALA4_02473) - 2648357..2650291 (+) 1935 WP_023083474.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=633982 PALA4_RS12435 WP_003090351.1 2644920..2645564(+) (letA) [Pseudomonas aeruginosa strain PALA4]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=633982 PALA4_RS12435 WP_003090351.1 2644920..2645564(+) (letA) [Pseudomonas aeruginosa strain PALA4]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTAGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537