Detailed information NTG0633937

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRK24_RS16045
• Genome accession: NZ_CP088919
• Coordinates: 3485731..3487119 (+)
• Length: 462 a.a.
• NCBI ID: WP_236100315.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain DSM-24678
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3480731..3492119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK24_RS16035 (LRK24_16035)	-	3482030..3483298 (+)	1269	WP_027485333.1	MFS transporter	-
LRK24_RS16040 (LRK24_16040)	-	3483318..3485561 (+)	2244	WP_007507357.1	glycosyl hydrolase family 65 protein	-
LRK24_RS16045 (LRK24_16045)	pilR	3485731..3487119 (+)	1389	WP_236100315.1	sigma-54 dependent transcriptional regulator	Regulator
LRK24_RS16050 (LRK24_16050)	-	3487282..3488553 (-)	1272	WP_007507360.1	FtsX-like permease family protein	-
LRK24_RS16055 (LRK24_16055)	-	3488550..3489881 (-)	1332	WP_043291964.1	FtsX-like permease family protein	-
LRK24_RS16060 (LRK24_16060)	-	3489917..3491452 (-)	1536	WP_007507365.1	response regulator	-
LRK24_RS16065 (LRK24_16065)	-	3491550..3491996 (-)	447	WP_007507367.1	response regulator	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50050.24 Da
• Isoelectric Point: 6.2012

>NTDB_id=633937 LRK24_RS16045 WP_236100315.1 3485731..3487119(+) (pilR) [Rhodanobacter denitrificans strain DSM-24678]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEVIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRRGSFTGASTDKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGDSVGQLSPSAREALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAAAGQ
PPTPVAAAAGADGGLDDYIRNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=633937 LRK24_RS16045 WP_236100315.1 3485731..3487119(+) (pilR) [Rhodanobacter denitrificans strain DSM-24678]
ATGAACCCCCAGACCGTTTTGGTCATCGATGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCGCGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGGTCATCGAGCTGATCGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTGCGCACCGCGCTGCGCCTCGCCGAGGAACGGCGCACCGGCGCCGCCGCGGCGAAGA
CCGGCGACTCCAGCGACCGCCTGATCGGCGACTCCACCGCCATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCGCGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAGCAGGGTCC
GCGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACC
GCAGGGGCAGCTTCACCGGCGCCAGCACCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAAGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATTCTTTCCGCCACCCACAAGAACCTCGGCCAGCTGGTCGAACAGGGCCAGT
TCCGCCAGGACCTGTTCTATCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGCCG
CAATTGTCCGCATTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGACAGCGTGGGCCAGTTGTCGCCGTCCGCGCGCGA
GGCGCTGGAGGCGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGATCAGCCACGAGCCGGCCGCAGCGGGACAG
CCGCCGACACCCGTCGCGGCCGCCGCCGGCGCGGACGGCGGCCTCGACGACTACATCAGAAACCTGGAGCGCACCGCCAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.606	100	0.606
pilR	Acinetobacter baumannii strain A118	47.403	100	0.474