Detailed information NTG0633902

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LRJ86_RS02305
• Genome accession: NZ_CP088918
• Coordinates: 511958..513124 (+)
• Length: 388 a.a.
• NCBI ID: WP_015446994.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW107-2APBS1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 506958..518124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRJ86_RS02285 (LRJ86_02285)	-	507338..508162 (+)	825	WP_015446992.1	ABC transporter substrate-binding protein	-
LRJ86_RS02290 (LRJ86_02290)	-	509002..509577 (-)	576	WP_007507063.1	YggT family protein	-
LRJ86_RS02295 (LRJ86_02295)	proC	509574..510398 (-)	825	WP_015446993.1	pyrroline-5-carboxylate reductase	-
LRJ86_RS02300 (LRJ86_02300)	pilT	510767..511804 (+)	1038	WP_007507061.1	type IV pilus twitching motility protein PilT	Machinery gene
LRJ86_RS02305 (LRJ86_02305)	pilU	511958..513124 (+)	1167	WP_015446994.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LRJ86_RS02310 (LRJ86_02310)	-	513191..513568 (-)	378	WP_015446995.1	BON domain-containing protein	-
LRJ86_RS02315 (LRJ86_02315)	-	513921..516131 (-)	2211	WP_236127000.1	TonB-dependent siderophore receptor	-
LRJ86_RS02320 (LRJ86_02320)	-	516277..516969 (+)	693	WP_015446997.1	response regulator transcription factor	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43408.83 Da
• Isoelectric Point: 6.7735

>NTDB_id=633902 LRJ86_RS02305 WP_015446994.1 511958..513124(+) (pilU) [Rhodanobacter denitrificans strain FW107-2APBS1]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVIKQLAMTKRGIIVFVGATGSGKSTSLASMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEIRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQQLIPTPDGKARRVAVEILLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQSLVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLEGVELEESRDAQNFSSNFLNR

Nucleotide

• Length: 1167 bp

>NTDB_id=633902 LRJ86_RS02305 WP_015446994.1 511958..513124(+) (pilU) [Rhodanobacter denitrificans strain FW107-2APBS1]
ATGAGCGACTTCGATTTCACCTCATTCCTGAAGCTGATGGTGCACAAGAAGGCCTCCGACTTGTTCATCACGGCGGGCGT
CGCCCCCTCGATGAAAGTGCAGGGCCGGATCGTGCCGATCACGCAGAGCCCGCTCAGTGTGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCATGAGTGCCAGTTCGCGATCTCCGCGCAAGGC
GTGGGCCGTTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGTATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
CACCATCGAGGAACTGACGCTGCCGCCGGTGATCAAGCAACTGGCGATGACCAAGCGCGGCATCATCGTGTTCGTCGGCG
CCACCGGCTCGGGCAAATCGACCTCGCTGGCGTCGATGATCGGCTACCGCAACCAGAACTCGACCGGTCATATCATCACG
ATCGAGGACCCGATCGAGTACGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTGAAGAACACCCTGCGCCAGGCCCCGGACGTGATCATGATCGGCGAAATCCGCACCCGCGAGGGCA
TGGACCACGCGATCGCCTTTGCCGAAACCGGTCACCTGGTGCTGTGCACGCTGCACGCGAACAACGCCAACCAGGCGATG
GACCGCATCCTGCACTTCTTCCCCGAGGACCGCCGCCAGCAACTGCTGATGGACCTGTCGCTCAACCTGAAGGGCATCGT
GGCGCAGCAGCTGATCCCCACGCCCGACGGCAAGGCGCGCCGGGTCGCGGTGGAGATTCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAGGTGATGAAGGAGTCCACTCTGCTCGGCATGAAGACCTTC
GACCAGAGCCTGGTCGAGCTGTACCACGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCTACGCCGACAGCTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCATACCCTGTCGCAAGGCCTGGAAGGCGTCGAGCTGGAGG
AAAGCCGCGACGCGCAGAACTTCAGCAGCAATTTCCTCAACCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (116-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.578	96.392	0.642
pilU	Acinetobacter baylyi ADP1	63.483	91.753	0.582
pilU	Vibrio cholerae strain A1552	52.809	91.753	0.485
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.129	95.876	0.394