Detailed information NTG0633899

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRJ86_RS01510
• Genome accession: NZ_CP088918
• Coordinates: 332982..334370 (-)
• Length: 462 a.a.
• NCBI ID: WP_015446878.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW107-2APBS1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 327982..339370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRJ86_RS01490 (LRJ86_01490)	-	328111..328557 (+)	447	WP_007507367.1	response regulator	-
LRJ86_RS01495 (LRJ86_01495)	-	328655..330190 (+)	1536	WP_007507365.1	response regulator	-
LRJ86_RS01500 (LRJ86_01500)	-	330226..331557 (+)	1332	WP_015446876.1	FtsX-like permease family protein	-
LRJ86_RS01505 (LRJ86_01505)	-	331554..332819 (+)	1266	WP_015446877.1	FtsX-like permease family protein	-
LRJ86_RS01510 (LRJ86_01510)	pilR	332982..334370 (-)	1389	WP_015446878.1	sigma-54 dependent transcriptional regulator	Regulator
LRJ86_RS01515 (LRJ86_01515)	-	334540..336786 (-)	2247	WP_015446879.1	glycosyl hydrolase family 65 protein	-
LRJ86_RS01520 (LRJ86_01520)	-	336806..338074 (-)	1269	WP_015446880.1	MFS transporter	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49981.13 Da
• Isoelectric Point: 5.9821

>NTDB_id=633899 LRJ86_RS01510 WP_015446878.1 332982..334370(-) (pilR) [Rhodanobacter denitrificans strain FW107-2APBS1]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEVIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRRGSFTGASTDKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGDSVGQLSPSAREALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAAAGQ
PPTPVAAAAGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=633899 LRJ86_RS01510 WP_015446878.1 332982..334370(-) (pilR) [Rhodanobacter denitrificans strain FW107-2APBS1]
ATGAACCCCCAGACCGTTTTGGTCATCGATGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCGCGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGGTCATCGAGCTGATCGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTGCGCACCGCGCTGCGCCTCGCCGAGGAACGGCGCACCGGCGCCGCCGCGGCGAAGA
CCGGCGACTCCAGCGACCGCCTGATCGGCGACTCCACCGCCATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCGCGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAGCAGGGTCC
GCGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACC
GCAGGGGCAGCTTCACCGGCGCCAGCACCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAAGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATTCTTTCCGCCACCCACAAGAACCTCGGCCAGCTGGTCGAACAGGGCCAGT
TCCGCCAGGACCTGTTCTATCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGCCG
CAATTGTCCGCATTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGACAGCGTGGGCCAGTTGTCGCCGTCCGCGCGCGA
GGCGCTGGAGGCGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGATCAGCCACGAGCCGGCCGCAGCGGGACAG
CCGCCGACACCCGTCGCGGCCGCCGCCGGCGCGGACGGCGGCCTCGACGACTACATCAGCAACCTGGAGCGCACCGCCAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.606	100	0.606
pilR	Acinetobacter baumannii strain A118	47.403	100	0.474