Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LRX86_RS01945 Genome accession   NZ_CP088895
Coordinates   415755..416573 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410755..421573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS01910 (LRX86_01910) - 411337..411467 (-) 131 Protein_367 hypothetical protein -
  LRX86_RS01915 (LRX86_01915) rpoZ 411506..411784 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LRX86_RS01920 (LRX86_01920) gmk 411857..412486 (-) 630 WP_000015937.1 guanylate kinase -
  LRX86_RS01925 (LRX86_01925) ispH 412609..413559 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRX86_RS01930 (LRX86_01930) fimU 413729..414202 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LRX86_RS01935 (LRX86_01935) pilV 414196..414756 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LRX86_RS01940 (LRX86_01940) pilW 414757..415758 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  LRX86_RS01945 (LRX86_01945) pilX 415755..416573 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LRX86_RS01950 (LRX86_01950) pilY1 416585..420439 (+) 3855 WP_000768956.1 PilC/PilY family type IV pilus protein Machinery gene
  LRX86_RS01955 (LRX86_01955) pilY2 420452..420934 (+) 483 WP_001046415.1 type IV pilin protein Machinery gene
  LRX86_RS01960 (LRX86_01960) pilE 420931..421356 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=633794 LRX86_RS01945 WP_000149374.1 415755..416573(+) (pilX) [Acinetobacter baumannii strain DETAB-R21]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=633794 LRX86_RS01945 WP_000149374.1 415755..416573(+) (pilX) [Acinetobacter baumannii strain DETAB-R21]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993