Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LRX86_RS01955 Genome accession   NZ_CP088895
Coordinates   420452..420934 (+) Length   160 a.a.
NCBI ID   WP_001046415.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-R21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415452..425934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRX86_RS01945 (LRX86_01945) pilX 415755..416573 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LRX86_RS01950 (LRX86_01950) pilY1 416585..420439 (+) 3855 WP_000768956.1 PilC/PilY family type IV pilus protein Machinery gene
  LRX86_RS01955 (LRX86_01955) pilY2 420452..420934 (+) 483 WP_001046415.1 type IV pilin protein Machinery gene
  LRX86_RS01960 (LRX86_01960) pilE 420931..421356 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LRX86_RS01965 (LRX86_01965) rpsP 421503..421754 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LRX86_RS01970 (LRX86_01970) rimM 421774..422322 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LRX86_RS01975 (LRX86_01975) trmD 422368..423108 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LRX86_RS01980 (LRX86_01980) rplS 423316..423684 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LRX86_RS01985 (LRX86_01985) - 423737..424678 (-) 942 WP_086321537.1 triacylglycerol lipase -
  LRX86_RS01990 (LRX86_01990) - 424793..425824 (-) 1032 WP_001189454.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=633796 LRX86_RS01955 WP_001046415.1 420452..420934(+) (pilY2) [Acinetobacter baumannii strain DETAB-R21]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=633796 LRX86_RS01955 WP_001046415.1 420452..420934(+) (pilY2) [Acinetobacter baumannii strain DETAB-R21]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

41.279

100

0.444