Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   N6H16_RS02105 Genome accession   NZ_CP104851
Coordinates   452780..453412 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain GYX208DH4E-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 447780..458412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H16_RS02080 (N6H16_02080) yhfG 447912..448079 (+) 168 WP_000736860.1 YhfG family protein -
  N6H16_RS02085 (N6H16_02085) fic 448069..448671 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  N6H16_RS02090 (N6H16_02090) pabA 448703..449266 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  N6H16_RS02095 (N6H16_02095) argD 449352..450572 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  N6H16_RS02100 (N6H16_02100) yhfK 450639..452729 (-) 2091 WP_001356225.1 YccS/YhfK family putative transporter -
  N6H16_RS02105 (N6H16_02105) crp 452780..453412 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  N6H16_RS02110 (N6H16_02110) yhfA 453714..454118 (+) 405 WP_001148908.1 OsmC family protein -
  N6H16_RS02115 (N6H16_02115) prkB 454173..455042 (-) 870 WP_001274680.1 phosphoribulokinase -
  N6H16_RS02120 (N6H16_02120) yheU 455096..455314 (-) 219 WP_000907085.1 YheU family protein -
  N6H16_RS02125 (N6H16_02125) yheT 455308..456330 (-) 1023 WP_000057380.1 hydrolase -
  N6H16_RS02130 (N6H16_02130) yheS 456330..458243 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=633637 N6H16_RS02105 WP_000242755.1 452780..453412(-) (crp) [Escherichia coli strain GYX208DH4E-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=633637 N6H16_RS02105 WP_000242755.1 452780..453412(-) (crp) [Escherichia coli strain GYX208DH4E-2]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467