Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   STP1_RS10685 Genome accession   NC_022737
Coordinates   2194184..2194753 (+) Length   189 a.a.
NCBI ID   WP_002465629.1    Uniprot ID   A0A2J6P1Z9
Organism   Staphylococcus pasteuri SP1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189184..2199753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STP1_RS10660 (STP1_2093) - 2190022..2191530 (+) 1509 WP_023375028.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  STP1_RS10665 (STP1_2094) - 2191683..2192285 (-) 603 WP_023375029.1 CPBP family glutamic-type intramembrane protease -
  STP1_RS10670 (STP1_2095) - 2192291..2192476 (-) 186 WP_002450747.1 DUF2187 family protein -
  STP1_RS10675 (STP1_2096) - 2192681..2193667 (+) 987 WP_023375030.1 lipoate--protein ligase -
  STP1_RS10680 (STP1_2097) - 2193747..2193965 (-) 219 WP_023375031.1 IDEAL domain-containing protein -
  STP1_RS10685 (STP1_2098) comK/comK1 2194184..2194753 (+) 570 WP_002465629.1 competence protein ComK Regulator
  STP1_RS10700 (STP1_2099) - 2195581..2195937 (-) 357 WP_023375032.1 DoxX family protein -
  STP1_RS13110 - 2196161..2196262 (-) 102 WP_019235857.1 SAR1012 family small protein -
  STP1_RS10705 (STP1_2100) - 2196364..2196576 (-) 213 WP_023375033.1 TM2 domain-containing protein -
  STP1_RS10710 (STP1_2101) - 2196780..2197334 (+) 555 WP_023375034.1 GNAT family N-acetyltransferase -
  STP1_RS10715 (STP1_2102) - 2197389..2198327 (-) 939 WP_023375035.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22438.69 Da        Isoelectric Point: 9.6661

>NTDB_id=63359 STP1_RS10685 WP_002465629.1 2194184..2194753(+) (comK/comK1) [Staphylococcus pasteuri SP1]
MTTQNIYVIRKGDMVIRPNYDNQNQPNGSEIIRFDKTVIQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKIIFANNETITLNVSFHSLWHQYTNAIFFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=63359 STP1_RS10685 WP_002465629.1 2194184..2194753(+) (comK/comK1) [Staphylococcus pasteuri SP1]
ATGACAACTCAGAATATTTACGTAATTAGAAAGGGAGACATGGTGATTAGGCCTAATTATGATAATCAAAATCAACCAAA
TGGTTCAGAAATTATTCGGTTTGATAAGACAGTCATACAAAGCCCATTTAAAGTTCAAAAGATTATTGAGAGGTCATGTA
AATTTTATGGCAACAATTATTTAAGTAAAAAAGCTGAAACCAATCGAATTACAGGTATCTCTAGTAAACCACCCATTTTA
TTAACTCCTTTATTTCCAACTTACTTTTTTCCTACTCATTCAGACCGACAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGAATCTATAAAAGAATTAAAACATCGTAAATGTAAAATCATTTTTGCAAACAATGAAACCATTACCCTAAATGTAT
CTTTCCACAGTTTATGGCATCAGTATACGAATGCAATCTTCTTTTATTATATGGTAGATAAACAATCCCGTATGAAATCT
AATGACCCCGATAAACCTATCGATTATGAAAAATCCTCACTAAACATTTTTGAAGCATTATCACGTTATTCGCTATTTGT
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6P1Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

80.423

100

0.804
  comK/comK1 Staphylococcus aureus N315

80.423

100

0.804

Multiple sequence alignment